Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma15g01097 | ATGGACTCTGATGATAATTGCTGTAAAGGCCTTTTTCTAGCCTTAGGATTGGTCGGTGAAAAGGAAACCACTTCGAAAATCGCGAACCAAGCCCCGGGTTTGAAATCGAGCTTGAGTTTTATAGGCTCTAATGGCGGTTCTGAGCCGTCTTTGAGGTTGGGTCTTTCTGGTGATGGTTTGTGTAGGCAGGCTTCTCCCCTAAGTCCCGTTTCTTCTTTCTGTAGCGGTAGGGCTAAGAGAGACAGGGAATTTAGCAGTGAGGATGTGGAGGCGGAGAAAGTTTCTTCAAGAGTTAGTGATGAAGACGAAGATGGCTCTAATTACAGAAAGAAACTTCGCTTAACTAAAGAACAGTCTACTCTTTTAGAAGACAGCTTCAAAAAGCATAGCACTCTTAACCTAAAGCAAAAGCAAGCTTTAGCAAGAGAGCTAAATCTTCGACCTCGACAAGTTGAAGTTTGGTTTCAGAATAGAAGAGCCAGGACGAAGGTGAAGCAAACTGAGGTAGACTGTGAGTTATTGAAGAAATGCTGCGAGAATCTGGCGGAAGAAAACAGGAGACTGCAAAAGGAAGTAGAAGAGCTAAAAGCTGTGAAACGAGCTCCCCCATTTTACGTGCAAATTCCTGCAACTGCAGCGACGCTAAGTCTCTGCCCTTCTTGCGAAAGGGTCGGTAGAGACGGCCATGGAAGATCTGCAGCTAGTTCGTCTGAGCTACCATTTTCAGTGGCTTCTTCTTCTTCTAACCCTCATTTTTTTAACCCTTTCACCAACTCCTCTGCAGCCTGTTAA | 792 | 45.08 | MDSDDNCCKGLFLALGLVGEKETTSKIANQAPGLKSSLSFIGSNGGSEPSLRLGLSGDGLCRQASPLSPVSSFCSGRAKRDREFSSEDVEAEKVSSRVSDEDEDGSNYRKKLRLTKEQSTLLEDSFKKHSTLNLKQKQALARELNLRPRQVEVWFQNRRARTKVKQTEVDCELLKKCCENLAEENRRLQKEVEELKAVKRAPPFYVQIPATAATLSLCPSCERVGRDGHGRSAASSSELPFSVASSSSNPHFFNPFTNSSAAC | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 43737466 | 43738512 | - | Bma014417.1 | Bma15g01097 | 97219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma15g01097 | 263 | Pfam | Homeodomain | 109 | 163 | IPR001356 | GO:0003677 | |
Bma15g01097 | 263 | ProSitePatterns | 'Homeobox' domain signature. | 140 | 163 | IPR017970 | GO:0000981|GO:0006355 | |
Bma15g01097 | 263 | Pfam | Homeobox associated leucine zipper | 165 | 198 | IPR003106 | GO:0006355|GO:0043565 | |
Bma15g01097 | 263 | Coils | Coil | 171 | 201 | - | - | |
Bma15g01097 | 263 | CDD | homeodomain | 109 | 166 | IPR001356 | GO:0003677 | |
Bma15g01097 | 263 | SUPERFAMILY | Homeodomain-like | 98 | 166 | IPR009057 | - | |
Bma15g01097 | 263 | SMART | halz | 165 | 208 | IPR003106 | GO:0006355|GO:0043565 | |
Bma15g01097 | 263 | ProSiteProfiles | 'Homeobox' domain profile. | 105 | 165 | IPR001356 | GO:0003677 | |
Bma15g01097 | 263 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
Bma15g01097 | 263 | PANTHER | - | 6 | 263 | - | - | |
Bma15g01097 | 263 | Gene3D | - | 102 | 170 | - | - | |
Bma15g01097 | 263 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE | 6 | 263 | - | - | |
Bma15g01097 | 263 | SMART | HOX_1 | 107 | 169 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma15g00444 | Bma-Chr15:4823091 | Bma15g01097 | Bma-Chr15:43737466 | 3.41E-57 | dispersed | |
Bma11g00651 | Bma-Chr11:11580372 | Bma15g01097 | Bma-Chr15:43737466 | 1.68E-32 | transposed | |
Bma15g01097 | Bma-Chr15:43737466 | Bma03g01175 | Bma-Chr3:17104644 | 1.44E-83 | wgd | |
Bma15g01097 | Bma-Chr15:43737466 | Bma06g00325 | Bma-Chr6:6236831 | 1.09E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58528 | PF00046 | Homeodomain | 6.30E-16 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma15g01097 | K09338 | - | tcc:18611354 | 308.531 |