Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00025 ATGGAGGCTGGGGGTAATGGCACAACCGGTTTGATGGATTTTGGAGAAAACAGTAACGGGCTTCGTTCAATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCATGCTAACTCGGACGCAGACAATAGCGCTTCCTTTCTCTCTCTGCCTTCCTCAATCACCAACAAGGCCGATCCAACTCGTAATAGTAGTAGCGGCTGTTCTCTCATAGTCGACGACCGGCACAACAACAGTGCATGGTGTTATTTCATGGACAACCAGAATAATAGTGAGAACAACTCTTCCTCAGCGCTCAAAGCTAAGATCATGGCTCATCCTCACTACCATCGCCTCTTAGCCGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGGAGTGATTCTAAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATGGGCCCCGCCGGCACAGGATGTCTCGGGGAAGATCCGGCTCTCGACCAGTTCATGGAAGCCTACTGTGAGATGCTGATCAAATACGAGCAAGAGCTCTCAAAACCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAAATAGAGTGCCAGTTCAAAGACCTTATTGTTTCTTCAGATACTGTTTGTGAGGAAGGTGAAAGGAATGGATCATCAGAAGAAGAAGTCGATATAGTGAACCAGAACCAGTCCATTGATCCCCATGCAGAAGATAGGGAACTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTTAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAAGAAGCCAGACAACAGTTGCTGGATTGGTGGACTAGACATTACAAGTGGCCTTACCCTTCGGAGGCGCAGAAGGTGGCCCTGGCGGAATCAACTGGTTTGGATCAGAAGCAGATCAACAACTGGTTTATCAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTTGTGGTGATGGATGCCACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTGGCCAGTCCTTTTTCCTTGGGCGTCGCCCCCACCTTGCTCTGA 1065 48.73 MEAGGNGTTGLMDFGENSNGLRSMMTMMHGMSSHHPHANSDADNSASFLSLPSSITNKADPTRNSSSGCSLIVDDRHNNSAWCYFMDNQNNSENNSSSALKAKIMAHPHYHRLLAAYLNCQKVGAPPGVILKLEEACASAASMGPAGTGCLGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQKIECQFKDLIVSSDTVCEEGERNGSSEEEVDIVNQNQSIDPHAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWTRHYKWPYPSEAQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVLASPFSLGVAPTLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 224535 226739 - Bpe000025.1 Bpe01g00025 97273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00025 354 Pfam ELK domain 234 255 IPR005539 GO:0003677
Bpe01g00025 354 Coils Coil 354 354 - -
Bpe01g00025 354 SUPERFAMILY Homeodomain-like 256 331 IPR009057 -
Bpe01g00025 354 Gene3D - 259 321 - -
Bpe01g00025 354 SMART KNOX1_2 98 142 IPR005540 GO:0003677|GO:0005634
Bpe01g00025 354 ProSiteProfiles 'Homeobox' domain profile. 254 317 IPR001356 GO:0003677
Bpe01g00025 354 SMART ELK_2 234 255 IPR005539 GO:0003677
Bpe01g00025 354 SMART HOX_1 256 321 IPR001356 GO:0003677
Bpe01g00025 354 SMART KNOX2_2 147 198 IPR005541 GO:0003677|GO:0005634
Bpe01g00025 354 PANTHER - 2 343 - -
Bpe01g00025 354 Pfam KNOX1 domain 99 138 IPR005540 GO:0003677|GO:0005634
Bpe01g00025 354 ProSitePatterns 'Homeobox' domain signature. 292 315 IPR017970 GO:0000981|GO:0006355
Bpe01g00025 354 Pfam KNOX2 domain 151 196 IPR005541 GO:0003677|GO:0005634
Bpe01g00025 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 343 - -
Bpe01g00025 354 Pfam Homeobox KN domain 274 313 IPR008422 GO:0003677|GO:0006355
Bpe01g00025 354 CDD homeodomain 266 318 IPR001356 GO:0003677
Bpe01g00025 354 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00025 Bpe-Chr1:224535 Bpe02g00473 Bpe-Chr2:3066712 5.76E-90 dispersed
Bpe01g00025 Bpe-Chr1:224535 Bpe08g00017 Bpe-Chr8:128311 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20747 PF03791 KNOX2 2.80E-20 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00025 - - rcu:8277968 497.278