Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00045 ATGCAATCATCCCAGAAGCACCCAAGTTCAGCCCAGCCTATGCAAGACATAAAGTCCTACTATTTATCGCATTTCCATGCATTAAGCGACAATGAATGTTCTAACCCGGGCAGCCGAGAGACGATTCTTTCCTTTGACTCCTGCAAGGAACAGTTTTTCACTCTCGAATCTTCCCCAGCCACCACTAACATCATCCCCTGTGACTCCTCTTCTGCTGTTAGTGTTGTGTCAAGCAGTTCCTTTTCGCCCCAAGGTTCTCAGTTGAGTTACTCAGATCCACACCATTCCTTTGATAACACATACGGATCACCAATAAGTGGGTGCTCTGTAAACACTGACGGCGACGAGTTAAAGCTCAAGCTCAGGGAACTGGAGATATCATTACTGGGACCAGAATCAGACATTGTTGACAGCTGCTACTGCTCTTTCAGTGGCGAAACAAATCAATCCTCTCCCTGGAAAGTTCAAATGTTAGAAGTAATTCCCAAATTAAACCTGAAGGAAGTGCTTATAAGATGTGCACAAGCGATACACGAGTCTGATTTATCCACAGCGATGCATTTAATGGAGGTGTTGGAGAAGATGGTGTCAGTATCAGGGGAGCCATTGCAAAGGTTAGGTGCTTACTTGTTGGAGGGGCTGAGAGCGAGGCTAGAAAGATCAGGGAGTTTAATCTACAAGGCACTTAAGTGTGAGGAGCCGACTAGCTCGGAGTTAATGTCCTATATGTCTGTTCTCTATCAAATCTGCCCGTACTGGAAGTTTGCCTACTCATGTGCAAACGTTATCATTCGAGAAGCCGTCCAAAATGAACCCAGAATCCACATCATAGATTTCCAAATTGCGCAGGGCAGTCAGTGGATACCACTCATTCAGGATCTTGCAATCCGGGGTGGAAGTCTTGGCCCGCCAATGATCCGCATTACTGGTGTAGATGATTCTCAATCAGCCCATGCTCGGGGAGGTGGACTTCATATCGTAGGGCAGAGGTTGTCGCAAGTTGCACAATCTTGTGGTGTGCGATTTGAGTTTAATGCAGCAGCTATGTCGGGGTGTGAGGTAGAATTGTGTAATTTTGGGATACGGCCTGGGGAGGCTCTGGCAGTCAATTTTCCGTATGTCTTACATCACATGCCTGACGAGAGTGTGAGCACTGAGAATCACAGAGATCGTGTGCTGAGGTTAGTCAAGAGTTTATCCCCCAAAGTTGTTGCCATTGTCGAGCAGGAATCCAACACTAACACTTCCCCGTTCCTTTTGAGATTTGTGGAGACATTGGATTACTATACGGCCATGTTCGAATCAATAGATGCAGCTCGTCCAAAAGACGACAAACAGAGGATCAGAGCCGAGCAGCACTGCGTGGCTAGAGATATAGTGAACATGACAGCCTGTGAGGGGGCTGAAAGGGTCGAACGGCATGAACTTCTTGGCAAATGGAGATCAAGATTAATGATGGCTGGGTTCACACCTTATCCGTTGAGTTCGTGTGTGGCAGATGCGGCAAGAAAAATGTTGATAGAATACGATCGGAATTACAGTGTGGCAGAGAGTCATGGAGCCCTTTATCTGGGATGGAAGAGGAGAGCCATGGCCACTTGCGCAGCGTGGAGATAG 1617 47.19 MQSSQKHPSSAQPMQDIKSYYLSHFHALSDNECSNPGSRETILSFDSCKEQFFTLESSPATTNIIPCDSSSAVSVVSSSSFSPQGSQLSYSDPHHSFDNTYGSPISGCSVNTDGDELKLKLRELEISLLGPESDIVDSCYCSFSGETNQSSPWKVQMLEVIPKLNLKEVLIRCAQAIHESDLSTAMHLMEVLEKMVSVSGEPLQRLGAYLLEGLRARLERSGSLIYKALKCEEPTSSELMSYMSVLYQICPYWKFAYSCANVIIREAVQNEPRIHIIDFQIAQGSQWIPLIQDLAIRGGSLGPPMIRITGVDDSQSAHARGGGLHIVGQRLSQVAQSCGVRFEFNAAAMSGCEVELCNFGIRPGEALAVNFPYVLHHMPDESVSTENHRDRVLRLVKSLSPKVVAIVEQESNTNTSPFLLRFVETLDYYTAMFESIDAARPKDDKQRIRAEQHCVARDIVNMTACEGAERVERHELLGKWRSRLMMAGFTPYPLSSCVADAARKMLIEYDRNYSVAESHGALYLGWKRRAMATCAAWR 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 308954 310570 - Bpe000045.1 Bpe01g00045 97293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00045 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 537 IPR005202 -
Bpe01g00045 538 Pfam GRAS domain family 166 538 IPR005202 -
Bpe01g00045 538 ProSiteProfiles GRAS family profile. 157 538 IPR005202 -
Bpe01g00045 538 PANTHER SCARECROW-LIKE PROTEIN 13 13 537 IPR030005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00045 Bpe-Chr1:308954 Bpe14g00729 Bpe-Chr14:5656426 0 dispersed
Bpe01g00045 Bpe-Chr1:308954 Bpe08g00028 Bpe-Chr8:179378 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20748 PF03514 GRAS 1.10E-121 CL0063 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00045 - - mcha:111005597 744.191