Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00053 ATGTTTCCCGGACTGATGCATTCTCGTCATGATATCCAGATTCATGCCGGCGATGGCTCTAATCTCACCAGCGGTCACGTTCGCGGAGGAGACCCGTGTCTCGTCTTAACTTCCGATCCGAAACCCCGCCTCCGTTGGACGGTCGATCTTCACGAGCGATTTGTTGATGCTGTCACTCAGCTCGGTGGCCCAACTAAAGCTACGCCAAAGGCTATTATGCGAACAATGAATGTGAAGGGTTTGACTCTGTTTCATTTAAAAAGTCACCTCCAGAAATACAGATTAGGGAAGCAATCGGGGAAAGATTTGGCCGAGTCACTTGATGATGGCTCGTACCTTCTAGACAGTCCTGGTACCAACAAGATTCCTTCTGACTTGCAAACTACTGATATGAACGATGGTTATGAAGTCAAAGAAGCATTAAGAGTCCAGATGGAAGTGCAAGGCAAGTTACATCTGCAAGTTGAGGCAGAAAAGCATTTACTGCTTCGCCAGGATGCAGAGAAAAGGTATTTAAGTTTGCTGGAAACAGCTTGTAAGATGCTTGCAGACCAATTTATTGGAAGTGAGGTTATGGATATGGAAAGCCAACAATCTCATGGATTGGGCGCTAGAAATTCAAGAAACTCCTCTGAGTACCCACTTGGCTTTTATTCAATACAATCATACGAGGCTGCTGCAGGAGAGTGTGGAGCGCAAGTACAAGGTAGTCTCTACCTTCAAAGGGCTGACTGTTCCACTGAAAGCTGCCTGACTAAATGA 762 46.19 MFPGLMHSRHDIQIHAGDGSNLTSGHVRGGDPCLVLTSDPKPRLRWTVDLHERFVDAVTQLGGPTKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDLAESLDDGSYLLDSPGTNKIPSDLQTTDMNDGYEVKEALRVQMEVQGKLHLQVEAEKHLLLRQDAEKRYLSLLETACKMLADQFIGSEVMDMESQQSHGLGARNSRNSSEYPLGFYSIQSYEAAAGECGAQVQGSLYLQRADCSTESCLTK 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 345035 348097 + Bpe000053.1 Bpe01g00053 97301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00053 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 252 IPR044848 GO:0003700
Bpe01g00053 253 Gene3D - 40 98 - -
Bpe01g00053 253 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 21 252 - -
Bpe01g00053 253 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Bpe01g00053 253 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Bpe01g00053 253 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Bpe01g00053 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Bpe01g00053 253 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00053 - - - csv:105435941 325.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00053 Bpe-Chr1:345035 Bpe07g00477 Bpe-Chr7:8171923 1.03E-51 dispersed
Bpe01g00053 Bpe-Chr1:345035 Bpe14g00844 Bpe-Chr14:6325672 3.65E-69 transposed
Bpe01g00053 Bpe-Chr1:345035 Bpe13g00855 Bpe-Chr13:14754415 4.46E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe02g02281 CCT 2 243 G2-like Transcription Factor Family AT1G25550 54.1 2.8e-61 232.3
Bpe13g01332 CCT 1 253 G2-like Transcription Factor Family AT1G25550 52.9 6.9e-60 227.6
Bpe13g01332 CCT 1 295 G2-like Transcription Factor Family AT1G13300 50.2 2.0e-61 233.0
Bpe08g00093 . 1 269 G2-like Transcription Factor Family AT3G46640 51.1 1.3e-62 236.9
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 2.0e-72 269.2
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT5G05090 51.7 5.4e-70 261.2
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.0e-62 234.6
Bpe14g00844 . 6 293 G2-like Transcription Factor Family AT4G13640 54.4 1.1e-55 213.8
Bpe13g00855 . 12 312 G2-like Transcription Factor Family AT3G24120 55.7 5.1e-77 284.6
Bpe14g00844 . 6 268 G2-like Transcription Factor Family AT3G24120 55.6 1.1e-66 250.4
Bpe07g00477 CCT 20 184 G2-like Transcription Factor Family AT3G24120 57.7 2.4e-42 169.5
Bpe15g00926 CCT 23 174 G2-like Transcription Factor Family AT3G24120 59.7 2.6e-41 166.0
Bpe12g00030 . 14 169 G2-like Transcription Factor Family AT3G24120 56.6 1.2e-38 157.1
Bpe01g00053 . 18 148 G2-like Transcription Factor Family AT3G24120 61.9 1.8e-37 153.3
Bpe11g01644 . 1 191 G2-like Transcription Factor Family AT1G69580 50.3 1.3e-41 167.2
Bpe15g00926 CCT 1 279 G2-like Transcription Factor Family AT1G79430 54.4 4.2e-70 261.9
Bpe07g00477 CCT 1 274 G2-like Transcription Factor Family AT1G79430 58.5 4.1e-65 245.4
Bpe12g00030 . 1 221 G2-like Transcription Factor Family AT1G79430 55.9 7.0e-57 218.0
Bpe13g00855 . 36 201 G2-like Transcription Factor Family AT1G79430 61.3 4.6e-40 162.2
Bpe08g00040 . 66 302 G2-like Transcription Factor Family AT2G01060 54.4 7.4e-55 210.7
Bpe02g00025 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 4.7e-95 344.7
Bpe04g00533 . 1 309 G2-like Transcription Factor Family AT3G10760 63.2 3.1e-91 332.0
Bpe02g00025 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 5.4e-64 241.1
Bpe04g00533 . 1 208 G2-like Transcription Factor Family AT2G40970 62.4 1.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20749 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00053 Bpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.002573