Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00053 ATGTTTCCCGGACTGATGCATTCTCGTCATGATATCCAGATTCATGCCGGCGATGGCTCTAATCTCACCAGCGGTCACGTTCGCGGAGGAGACCCGTGTCTCGTCTTAACTTCCGATCCGAAACCCCGCCTCCGTTGGACGGTCGATCTTCACGAGCGATTTGTTGATGCTGTCACTCAGCTCGGTGGCCCAACTAAAGCTACGCCAAAGGCTATTATGCGAACAATGAATGTGAAGGGTTTGACTCTGTTTCATTTAAAAAGTCACCTCCAGAAATACAGATTAGGGAAGCAATCGGGGAAAGATTTGGCCGAGTCACTTGATGATGGCTCGTACCTTCTAGACAGTCCTGGTACCAACAAGATTCCTTCTGACTTGCAAACTACTGATATGAACGATGGTTATGAAGTCAAAGAAGCATTAAGAGTCCAGATGGAAGTGCAAGGCAAGTTACATCTGCAAGTTGAGGCAGAAAAGCATTTACTGCTTCGCCAGGATGCAGAGAAAAGGTATTTAAGTTTGCTGGAAACAGCTTGTAAGATGCTTGCAGACCAATTTATTGGAAGTGAGGTTATGGATATGGAAAGCCAACAATCTCATGGATTGGGCGCTAGAAATTCAAGAAACTCCTCTGAGTACCCACTTGGCTTTTATTCAATACAATCATACGAGGCTGCTGCAGGAGAGTGTGGAGCGCAAGTACAAGGTAGTCTCTACCTTCAAAGGGCTGACTGTTCCACTGAAAGCTGCCTGACTAAATGA 762 46.19 MFPGLMHSRHDIQIHAGDGSNLTSGHVRGGDPCLVLTSDPKPRLRWTVDLHERFVDAVTQLGGPTKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDLAESLDDGSYLLDSPGTNKIPSDLQTTDMNDGYEVKEALRVQMEVQGKLHLQVEAEKHLLLRQDAEKRYLSLLETACKMLADQFIGSEVMDMESQQSHGLGARNSRNSSEYPLGFYSIQSYEAAAGECGAQVQGSLYLQRADCSTESCLTK 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 345035 348097 + Bpe000053.1 Bpe01g00053 97301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00053 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 252 IPR044848 GO:0003700
Bpe01g00053 253 Gene3D - 40 98 - -
Bpe01g00053 253 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 21 252 - -
Bpe01g00053 253 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Bpe01g00053 253 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Bpe01g00053 253 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Bpe01g00053 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Bpe01g00053 253 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00053 Bpe-Chr1:345035 Bpe07g00477 Bpe-Chr7:8171923 1.03E-51 dispersed
Bpe01g00053 Bpe-Chr1:345035 Bpe14g00844 Bpe-Chr14:6325672 3.65E-69 transposed
Bpe01g00053 Bpe-Chr1:345035 Bpe13g00855 Bpe-Chr13:14754415 4.46E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20749 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00053 - - csv:105435941 325.094