Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00118 ATGGCGATTCACAAACCGGAGCTAGGTTCTAACCTGAACTCCAATCAACCTGCAAAGCTTCGTTGGGGTGAGCTTGAGGAGGACGATGGAGAGGACCTTGACTTTTTTTTCCCTCCTAAGCAGGTAATCGGACCCGATGAGAATGGAATTAAGAAAGTTATCGAATATAAATTGAACAATGATGGTAACAAGGTTAAGATCACCACCATAAGTCGCATTCGTAAGCTCGCAAATGCTAGGCTCAGCAAACAAGCTGTGGAGCGTAGATCTTGGCCTAAGTTCGGAGATGCGGTTCACGAAGAAGTTGGTAGCAGGCTGACCATGGTCTCCACTGAAGAGATTGTCCTCGAGCGCCCGAGGGCTCCTGGTACCAAAACAGAGGAGCCAAAGGTTGCTGGTGATTCGTTAACCCAACTTAATAAAGGCGCTGTTCTCATGGTTTGTAGAACTTGTGGAAAGAAAGGTGACCATTGGACTTCAAGGTGCCCCTACAAGGATCTTGCTCCACAGGCAGAGGGGTTTGTGGATAAGCCCGCTGCATCCGAGATTACTGCAGGTGCTTCAGGCCCTAGTAAAGGAGCATATGTACCGCCCAGCATGAGAGCAGGGGCCGAGAAAACAGGAACTGACATGAGACGCCGGAATGATGAGAACTCTGTTCGTGTTACCAACCTCTCAGAGGACACACGAGAGCCTGACCTTCATGAGCTTTTCCGACCTTTTGGTGCCATAAGCCGTGTATACGTGGCTATAGATCAGAAGACAGGAATGAGCAGAGGATTTGGTTTTGTCAACTTTGTCAACAGGGAAGAAGCTCAGAGAGCTATCAACAAACTCAATGGGTACGGCTATGACAACCTGATCCTCAGAGTGGAATGGGCCACTCCTAGAGCAAATTAG 900 48.67 MAIHKPELGSNLNSNQPAKLRWGELEEDDGEDLDFFFPPKQVIGPDENGIKKVIEYKLNNDGNKVKITTISRIRKLANARLSKQAVERRSWPKFGDAVHEEVGSRLTMVSTEEIVLERPRAPGTKTEEPKVAGDSLTQLNKGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGFVDKPAASEITAGASGPSKGAYVPPSMRAGAEKTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAISRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 686496 688453 + Bpe000116.1 Bpe01g00118 97366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00118 299 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 19 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bpe01g00118 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Bpe01g00118 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 299 - -
Bpe01g00118 299 PIRSF Transl_init_eIF-3_RNA-bind 12 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bpe01g00118 299 CDD eIF3G 48 166 IPR024675 -
Bpe01g00118 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Bpe01g00118 299 Gene3D - 185 299 IPR012677 -
Bpe01g00118 299 SUPERFAMILY RNA-binding domain, RBD 216 298 IPR035979 GO:0003676
Bpe01g00118 299 Pfam Eukaryotic translation initiation factor 3 subunit G 41 167 IPR024675 -
Bpe01g00118 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 299 - -
Bpe01g00118 299 SMART rrm1_1 219 292 IPR000504 GO:0003723
Bpe01g00118 299 CDD RRM_eIF3G_like 219 294 IPR034240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00118 Bpe-Chr1:686496 Bpe01g00625 Bpe-Chr1:4120839 6.52E-11 dispersed
Bpe08g01216 Bpe-Chr8:13790164 Bpe01g00118 Bpe-Chr1:686496 6.57E-11 dispersed
Bpe11g00913 Bpe-Chr11:6775439 Bpe01g00118 Bpe-Chr1:686496 6.35E-11 dispersed
Bpe01g00118 Bpe-Chr1:686496 Bpe10g00710 Bpe-Chr10:13501555 4.46E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00118 K03248 - jre:109017816 502.286