Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00162 ATGTTGGATCTTAATCGCAATGTTATCACGACCGTTCCAACTCAGAGTAACGAATCTATTTTGCCGATTGAGAAGCCCCCTCAGGGTTCGGTGAGCCAAAGGGATGAATCAGAAACCTCCAATTCCTTGATTGTCAATGCGGAGGCCTCGAGCAATGGATATGATGAAGATTCGTGCTCTACACGCGCTGTTGATGCGGTGGTTACATTTAACTTCGACATTTTGAAGACTGGGAAAGGGAACGATGTCGTCACGAAGGAGTTCTTTCCAACAACTGGAACTTCTTCCGGAGTCAAGGGGAATTTTGGGAATTGGCAGGGGCAAAACTCGGCTTCTTCTTCATCTTCTTCTTCTAGGAAGAATTGGATCGACCTAGCGTTTGATCAGGGAGGCTCCGTAACTGAATTGAGAGTGATTAAGCCACAACCATTGAAAAAGAGCAGGAGGGGACCGAGATCTCGGAGCTCGCAGTATCGAGGTGTTACGTTCTACAGGAGAACTGGGCGATGGGAATCCCATATATGGTTTGTCACTTTGATTGGAATTTGGATTTCCTTAGCTGGCTGTTTGAACAAACATTTATGTGTTTTTTTAACTGGATTCAGAGCATATGATCGAGCTGCAATAAAGTTCAGAGGCGTTGATGCAGACATCAATTTTGTTCTCAGTGATTACGAGGAAGAATTGAAGCAGATGAAGAATCTTAGCAAGGAAGAATTTGTTCACATACTTCGGCGACAGAGCACAGGTTTTTCAAGGGGAAGCTCAAAATATCGAGGTGTAACGCTGCACAAGTGTGGCCGATGGGAAGCTAGAATGGGACAGTTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCAGCTATCAAATGTAATGGAAGAGAGGCAGTCACTAATTTTGAGCCTAGCACTTACGAGGAGGAGATGATTTCAGAGGGCAGTAATGAAGGTTGTGAAAAATTGCTTGATCTGAATCTAGGAATATCACCTCCCTCAATTGATAATGGTCCCAAGGAAAGTGAAGGGCGACTTCAGTTTAACACTGGCCCCTATTATGTACGCAATGGAAGGAGTTCAAGGATAGAAAACCATGCTAATGCAATGGTTGGTGATCCTCCTATGGCCATGAAAGGGCTGGTAATGACATCAGATAACCCGCCCTTTTGGAACAGTGTGCATCCGAATAACTTTCCCAATGAGGAGAGACTGTCAGAGAAGAGACTTGCATTAGGTTCTTCGCGAGGACTTCCCAACTGGGCCTGGAAAATCCATTGCCCTGTTGGTGCTACCCAAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTTAGCTACCCCCTCCCCTGCTGCCATCCCTCCATTAAATCCACCCAGTTCCACACCACTCAATCTCTGTTTTGCTTCGAAATCATCTGCCTTTAACTCCACGCCATATCATTTTCAAGTGAAGCCTCCACCGGCACCACCATAA 1518 45.39 MLDLNRNVITTVPTQSNESILPIEKPPQGSVSQRDESETSNSLIVNAEASSNGYDEDSCSTRAVDAVVTFNFDILKTGKGNDVVTKEFFPTTGTSSGVKGNFGNWQGQNSASSSSSSSRKNWIDLAFDQGGSVTELRVIKPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWFVTLIGIWISLAGCLNKHLCVFLTGFRAYDRAAIKFRGVDADINFVLSDYEEELKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEEEMISEGSNEGCEKLLDLNLGISPPSIDNGPKESEGRLQFNTGPYYVRNGRSSRIENHANAMVGDPPMAMKGLVMTSDNPPFWNSVHPNNFPNEERLSEKRLALGSSRGLPNWAWKIHCPVGATQMPLFSTAASSGFSFLATPSPAAIPPLNPPSSTPLNLCFASKSSAFNSTPYHFQVKPPPAPP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 959651 962782 - Bpe000161.3 Bpe01g00162 97410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00162 505 CDD AP2 256 316 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 SUPERFAMILY DNA-binding domain 256 315 IPR016177 GO:0003677
Bpe01g00162 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 473 - -
Bpe01g00162 505 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 Coils Coil 218 238 - -
Bpe01g00162 505 MobiDBLite consensus disorder prediction 17 41 - -
Bpe01g00162 505 ProSiteProfiles AP2/ERF domain profile. 157 221 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 473 - -
Bpe01g00162 505 Gene3D AP2/ERF domain 156 222 IPR036955 GO:0003700|GO:0006355
Bpe01g00162 505 Gene3D AP2/ERF domain 256 315 IPR036955 GO:0003700|GO:0006355
Bpe01g00162 505 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 ProSiteProfiles AP2/ERF domain profile. 257 314 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 SMART rav1_2 257 320 IPR001471 GO:0003700|GO:0006355
Bpe01g00162 505 SMART rav1_2 157 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00162 Bpe-Chr1:959651 Bpe11g00910 Bpe-Chr11:6744803 6.90E-08 dispersed
Bpe01g00162 Bpe-Chr1:959651 Bpe15g01078 Bpe-Chr15:19991257 1.46E-53 wgd
Bpe01g00162 Bpe-Chr1:959651 Bpe08g00135 Bpe-Chr8:709353 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20758 PF00847 AP2 3.00E-09 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00162 K09284 - csv:101222024 603.594