Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00218 TCAGATCAGATGGAACCAATCCCCGGCTCTAACCCCCTTCTGCAATTCAGTGATTTCGAGCTTCATGATTTCATTGCTGACCCTAATTTCAATCAGTTTGTTGAGCTGATTCGCGGCGAACACGAAGATCCCGTCTTGAACTTCGATCTCGATCTTATCAATGGCTCTTTCGCCCACACTGGGTTTAGTGCGAGCCCTGAATTTGCTGCGTCAGATCCGCATTCTCTGTTTGAGGGGCTGGCGAGTTTTGATGCAGGAGAAATGACCGGAAAGGAAGGAGAAGAGGAAGACGATAATGACGGCGACGATTCTTCTGCAACTACTACGACAATGGCGACCAAAGGGACGAAGCTTGATCGGTCAAGAACTTTGTTATCGGAGAGAAGAAGAAGAGGGAGGATGAAGGAGAAGCTTTACGCTTTACGTTCTTTAGTTCCTAACATAACAAAGATGGACAAGGCCTCCATTGTAGGAGACGCTGTTTTGCACGTGAAAGAGCTTCAAATGCAGGCGAAGAAGCTCAAATCAGAGATAGCTGTTCTTGAAGCATCCATGGCTGCATCAGGAAGCTATCAAAGCTTAACTGAAAACCCTAAGAAAAAAATTCAAGCTCCTCTCAGTCATAACCTAATCGTTCAAAAGAAAATAATTGAACAGATGGACGTGTTTCAAGTGGAAGAAAGAGGGTTTTACGTGAGACTGGTGTGTGAAAGAGGAGAAGGCGTAGCCATAGCTCTGTACAAAGTTCTAGAATCGCTTGCTAACTTCAATCTTCAGAGCTCCAATTTGGCTATGGCGTCTGAGAGATTTGTACTCACAGCTACCATGAACGTGAGGGATTGCGAGCAGGATATCAATTTGCCAAATTTGAAGCTTTGGGTGGCTGGGGCTCTTCTTAACCAAGGATTTGAATTCAAACCATAA 924 44.91 SDQMEPIPGSNPLLQFSDFELHDFIADPNFNQFVELIRGEHEDPVLNFDLDLINGSFAHTGFSASPEFAASDPHSLFEGLASFDAGEMTGKEGEEEDDNDGDDSSATTTTMATKGTKLDRSRTLLSERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLHVKELQMQAKKLKSEIAVLEASMAASGSYQSLTENPKKKIQAPLSHNLIVQKKIIEQMDVFQVEERGFYVRLVCERGEGVAIALYKVLESLANFNLQSSNLAMASERFVLTATMNVRDCEQDINLPNLKLWVAGALLNQGFEFKP 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1340377 1341574 + Bpe000211.1 Bpe01g00218 97466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00218 307 Pfam Helix-loop-helix DNA-binding domain 125 168 IPR011598 GO:0046983
Bpe01g00218 307 Coils Coil 164 184 - -
Bpe01g00218 307 MobiDBLite consensus disorder prediction 104 119 - -
Bpe01g00218 307 Gene3D - 117 191 IPR036638 GO:0046983
Bpe01g00218 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 189 IPR036638 GO:0046983
Bpe01g00218 307 MobiDBLite consensus disorder prediction 89 127 - -
Bpe01g00218 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Bpe01g00218 307 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 79 305 - -
Bpe01g00218 307 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 305 - -
Bpe01g00218 307 SMART finulus 124 173 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00218 Bpe11g00830 CCT
Bpe01g00218 Bpe08g00180 CCT
Bpe01g00218 Bpe08g01301 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00218 Bpe-Chr1:1340377 Bpe15g00806 Bpe-Chr15:18248485 2.55E-17 dispersed
Bpe01g00218 Bpe-Chr1:1340377 Bpe11g00830 Bpe-Chr11:6188792 1.38E-113 wgd
Bpe01g00218 Bpe-Chr1:1340377 Bpe08g00180 Bpe-Chr8:994639 1.31E-151 wgd
Bpe01g00218 Bpe-Chr1:1340377 Bpe08g01301 Bpe-Chr8:14326376 2.34E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20762 PF00010 HLH 1.70E-08 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00218 - - qsu:112032263 308.916