Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00263 CTAAAAGTGACAGGTTCACCTTCTGGCAACAATCTCACACCGGCAGGTCCATGCCGATATGACAGTTCCCTAGGTCTCTTGACTAAAAAGTTTATCATCTTGATCAAACAAGCAGAAGATGGTATCCTTGACCTCAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGAGAATATATGATATAACTAATGTCCTTGAAGGAATTGGTCTGATAGACAAGAAGCTGAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGCCAGGGGACGATGATGAAAATTTTACTAGTTTACAAGCAGAAATCGAAAAACTTTCCATTGAGGAGCATGGATTAGATGAACAAATAAGCCAAATGCAGGAAAGATTACAGGGCCTCAGTGAATCTGAGAACAATCAAAGGTGGCTTTTTGTCACCGAGGAAGATATCAAAGGTTTGCCTTGCTTTCAGAATGAAACGTTAATAGCTATAAAGGCTCCACATGGGACTATGTTAGAAGTACCCGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGGTACAGGATAGTCCTCAGAAGCACTATGGGTCCCATAGATGTTTACCTTGTTAGTAAATTTGAAGAGAAATTTGAGGAGGTTAATGATGTTGATGTACCTCTGATCTCAAACCTGCCTTCAACTTCCGGATACATTGAAGCTCCCGTAACAGCAATGGAAGTAGAAGTTAGCAGAGGGAAGGATATTGGAATGCATGAGCCAGATGTTCACCAGATGTGTTCGGATCTTAATGATTCACAGGATTTTGTGGGTGGGATCATGAAGATTATTCCCTCAGTAGTGGATAGTGATGCTGATTACTGGCTTCTATCGGGCGCGGATGTTAGCATTACTGACATATGGAGAACTGAAACTGGTGTTGAATGGGATGATTTGGGTACACTCCATGAAGATTATCCTATGACCAACATTGATGAGATAGCCAATGTTGAATTGCCTCTTCCGCAGTCACCGGCACCGTCAGTTGCAGATGAATTGCCTTCTGATTCTAAACCTTCTGGAAGT 1050 42.48 LKVTGSPSGNNLTPAGPCRYDSSLGLLTKKFIILIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIDKKLKNRIQWKGLDVSRPGDDDENFTSLQAEIEKLSIEEHGLDEQISQMQERLQGLSESENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTMLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSKFEEKFEEVNDVDVPLISNLPSTSGYIEAPVTAMEVEVSRGKDIGMHEPDVHQMCSDLNDSQDFVGGIMKIIPSVVDSDADYWLLSGADVSITDIWRTETGVEWDDLGTLHEDYPMTNIDEIANVELPLPQSPAPSVADELPSDSKPSGS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1579944 1582744 - Bpe024484 Bpe01g00263 97511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00263 350 SUPERFAMILY Winged helix DNA-binding domain 21 85 IPR036390 -
Bpe01g00263 350 Pfam E2F/DP family winged-helix DNA-binding domain 21 84 IPR003316 GO:0005667|GO:0006355
Bpe01g00263 350 Pfam E2F transcription factor CC-MB domain 100 200 IPR032198 GO:0046983
Bpe01g00263 350 MobiDBLite consensus disorder prediction 328 350 - -
Bpe01g00263 350 PANTHER TRANSCRIPTION FACTOR E2F 4 337 IPR015633 GO:0000978|GO:0006357
Bpe01g00263 350 Gene3D - 13 86 IPR036388 -
Bpe01g00263 350 Gene3D - 93 201 - -
Bpe01g00263 350 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Bpe01g00263 350 CDD E2F_DD 99 201 IPR032198 GO:0046983
Bpe01g00263 350 Coils Coil 35 55 - -
Bpe01g00263 350 Coils Coil 104 124 - -
Bpe01g00263 350 SUPERFAMILY E2F-DP heterodimerization region 96 201 IPR037241 -
Bpe01g00263 350 PANTHER TRANSCRIPTION FACTOR E2FB 4 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00263 Bpe08g00221 CCT
Bpe01g00263 Bpe08g00221 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00263 Bpe-Chr1:1579944 Bpe04g00633 Bpe-Chr4:4015537 1.18E-125 dispersed
Bpe01g00263 Bpe-Chr1:1579944 Bpe08g00221 Bpe-Chr8:1229150 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20767 PF16421 E2F_CC-MB 1.30E-33 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00263 K06620 - csv:101219318 527.709