Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00275 ATGTCTTTGGAGTTGATGGCCTCCGAACGTATCTGCTATGTTTACTGCAACTTCTGCAACACTGTTTTAGCGGTAAGCGTTCCACGCAGTAGCTTGTTCAACATCGTGACAGTGAGATGTGGGCACTGCACCAATTTGCTGTCTGTGAATGTGGGAGCTTCCCTATTTCCTGCTCAAGACTCGCAGCAGCTAAGTCCGGGGGGTTCCAGCACAGACAGCGGTAGTTCCTCTTACAAATCTACTAAAGTAGGCTCTTTTGAGTCTGTAGATCATGAACCACCTAGACTGCCTCCAGTTCGCCCTCCAGAGAAAAGACAGCGCCTGCCTTCAGCTTATAACAGGTTCATTAAAGAGGAGATCCAGAGGATTAAAGCCAGTAATCCTGACATAACCCACAGAGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATTCATTTTGGGTTGAAGATAACGGAAGCAAGCAAGCAAGCAAAGTTGGATAATTCATTTGCAGGAGAAGGGATCAGTAAGAAGGCAAAAACTAACGGATTCTTCTAA 552 45.65 MSLELMASERICYVYCNFCNTVLAVSVPRSSLFNIVTVRCGHCTNLLSVNVGASLFPAQDSQQLSPGGSSTDSGSSSYKSTKVGSFESVDHEPPRLPPVRPPEKRQRLPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKITEASKQAKLDNSFAGEGISKKAKTNGFF 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1654687 1658902 - Bpe000266.1 Bpe01g00275 97523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00275 183 MobiDBLite consensus disorder prediction 60 107 - -
Bpe01g00275 183 SUPERFAMILY HMG-box 98 146 IPR036910 -
Bpe01g00275 183 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 175 - -
Bpe01g00275 183 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Bpe01g00275 183 MobiDBLite consensus disorder prediction 60 84 - -
Bpe01g00275 183 Gene3D High mobility group box domain 95 163 IPR036910 -
Bpe01g00275 183 MobiDBLite consensus disorder prediction 85 102 - -
Bpe01g00275 183 PANTHER PROTEIN YABBY 6-RELATED 6 175 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00275 Bpe-Chr1:1654687 Bpe01g00747 Bpe-Chr1:6729826 1.28E-62 dispersed
Bpe01g00275 Bpe-Chr1:1654687 Bpe08g00230 Bpe-Chr8:1302089 8.36E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20768 PF04690 YABBY 3.90E-67 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00275 K25796 - zju:107410267 255.373