Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00308 ATGTTTAGATTCTGGGGAAGGAGGATCCTTGAAGCCAATGAGGATGATCTTAAGGTGCCTTTAAATGGATCAATTCTCAACAACGAACAAGATATAGCAGTATGTCGACTAAGAATTAAAGGAATGACATGTACTACCTGTGCTGAATCCGTTGAAAGTGCCCTTCTAATGTTTGAGGGAGTGAAAAAAGCAGCAGTTGGTTTAGCTTTGCAAGAAGCAAGGGTGCATTTTGATTCTAACCTCATCAATGCTGAGCAAGTTGCTCAGGCAATCGAAGATGCTGGCTTTGGAGCTGAGATAATAAATTCCGGAAATGATGTTAACATAGCTCATCTAAAACTTCAAGGAATTAGTTCTCCAGTACAGATGACCACTATAAAATCTTTGCTTGAAGTAGCTGTTGGTGTAGATCGTGTTGACATGGACCTGAAAGGACAAACGGTTGCCATAAGCTATGACCCAGACTTCACTGGTCCTAGGTCACTTATACAATGCATAAGGGAATCAGGCCAAGGTCCAGACACTTTTGATGCAAACTTGTTTGCTCCTCCAAGACGAAGAGATACAGAGCAACTTCATGAAATTCAGACTTACAGAAACCAATTCCTGCTCAGCTGCCTGTTTTCTGCTCCTGTATTTTTATTTGCCATGGTACTTCCCATGCTCCCCCCTTATGGAAATTGGTTAGGGTACAAGATTCATAACATGTTTACTGTTGGGATGCTTCTTAGATGGATTCTTTGCACACCTGTTCAGTTTATTGTTGGCCGAAGATTTTATGTGGGATCATACTATGCATTGAGGCGAAAATCTGCTAATATGGAAGTTCTAGTGGCATTAGGCACTAATGCTGCCTACTTTTATTCTGTATACATAATAATGAAATCATTGGCATCAGATGGGTTTGAAGGACAAGATTTCTTTGAAACTAGTTCCATGCTAATATCCTTTATTCTCTTGGGGAAATACTTGGAGGTAGTGGCTAGAGGAAAAACTTCCGATGCTTTAGCTAAGCTTGCGGATCTTGCTCCTGATGTAGCTCATTTGTTAAAATTAGACGATGATGGGAACGTTATCTTAGAGATGGAAATTGACACCCAATTGATACAGAGAAATGACATTATAAAGATTGTTCCAGGTGAAAAAGTTCCGGTTGACGGAATTGTTATAAATGGTCATAGTCATGTTAATGAGAGTATGATCACAGGAGAGGCTAGGCCCACTTTTAAAAAAGCTGGTGACAAGGTTATTGGCGGCACTGTCAATGAAAATGGATGTTTATTGGTTAAAGCCACTCATGTGGGGTCTGATACTGCACTATCTCAAATTGTTCAACTTGTGGAGGCTGCGCAACTTGCTAGAGCACCTGTTCAGAAATTAGCTGACCAGATATCAAAATTTTTTGTTCCTGCTGTTGTTCTCGCAGCATTTCTAACATGGCTTGCGTGGTTCGTTTCTGGAGAAATGCGTATATATCCTAGGCACTGGATACCAAAGGCTATGGATAGATTTGAGCTTGCATTGCAGTTTGGCATTTCTGTGCTAGTGGTTGCCTGCCCATGCGCTCTTGGTCTAGCAACACCAACAGCAGTCATGGTTGCCTCAGGGAAAGGTGCTTCTCAAGGGGTGCTTATCAAAGGTGGAAACGCCTTGGAAAAAGCACACAAGGTACATTTTATAGAATGTGAACGAAACTTATAG 1701 41.21 MFRFWGRRILEANEDDLKVPLNGSILNNEQDIAVCRLRIKGMTCTTCAESVESALLMFEGVKKAAVGLALQEARVHFDSNLINAEQVAQAIEDAGFGAEIINSGNDVNIAHLKLQGISSPVQMTTIKSLLEVAVGVDRVDMDLKGQTVAISYDPDFTGPRSLIQCIRESGQGPDTFDANLFAPPRRRDTEQLHEIQTYRNQFLLSCLFSAPVFLFAMVLPMLPPYGNWLGYKIHNMFTVGMLLRWILCTPVQFIVGRRFYVGSYYALRRKSANMEVLVALGTNAAYFYSVYIIMKSLASDGFEGQDFFETSSMLISFILLGKYLEVVARGKTSDALAKLADLAPDVAHLLKLDDDGNVILEMEIDTQLIQRNDIIKIVPGEKVPVDGIVINGHSHVNESMITGEARPTFKKAGDKVIGGTVNENGCLLVKATHVGSDTALSQIVQLVEAAQLARAPVQKLADQISKFFVPAVVLAAFLTWLAWFVSGEMRIYPRHWIPKAMDRFELALQFGISVLVVACPCALGLATPTAVMVASGKGASQGVLIKGGNALEKAHKVHFIECERNL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1897906 1901191 + Bpe000298.1 Bpe01g00308 97556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00308 566 ProSitePatterns Heavy-metal-associated domain. 39 68 IPR017969 GO:0046872
Bpe01g00308 566 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 314 560 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe01g00308 566 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 28 560 - -
Bpe01g00308 566 CDD HMA 37 99 IPR006121 GO:0046872
Bpe01g00308 566 ProSiteProfiles Heavy-metal-associated domain profile. 109 175 IPR006121 GO:0046872
Bpe01g00308 566 SUPERFAMILY HMA, heavy metal-associated domain 104 173 IPR036163 GO:0046872
Bpe01g00308 566 SUPERFAMILY Calcium ATPase, transmembrane domain M 306 552 IPR023298 -
Bpe01g00308 566 Gene3D - 28 108 - -
Bpe01g00308 566 Gene3D - 329 451 - -
Bpe01g00308 566 Gene3D - 109 181 - -
Bpe01g00308 566 Pfam E1-E2 ATPase 361 540 - -
Bpe01g00308 566 ProSiteProfiles Heavy-metal-associated domain profile. 34 100 IPR006121 GO:0046872
Bpe01g00308 566 Pfam Heavy-metal-associated domain 37 96 IPR006121 GO:0046872
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 89 109 - -
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 202 223 - -
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 60 83 - -
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 257 282 - -
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 237 257 - -
Bpe01g00308 566 PRINTS Copper-transporting ATPase 1 signature 34 59 - -
Bpe01g00308 566 PANTHER ATP7, ISOFORM B 28 560 - -
Bpe01g00308 566 SUPERFAMILY HMA, heavy metal-associated domain 30 104 IPR036163 GO:0046872
Bpe01g00308 566 SUPERFAMILY Calcium ATPase, transduction domain A 362 447 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00308 Bpe-Chr1:1897906 Bpe08g01488 Bpe-Chr8:15588049 3.26E-14 dispersed
Bpe01g00308 Bpe-Chr1:1897906 Bpe08g00778 Bpe-Chr8:9667587 1.76E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00308 K17686 - csin:114270619 842.802