Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe01g00318 | ATGCCCACCATGCACAATGAACCTATCACACAACCTAGGCAACTCGAACTTATCGGTCACACTATGACTTGTGCAGCAAATCCATATCAGGATTCATGTATGGGAGAAATTATGGCCACTTATGGGCACCAGCCTTTGTTTTATCCTCCTTTTCCCGGAATGCCACATGGTAGAATGCCTTTGCCTCTTGAGATGGCTCAGGAGCCTGTTTATGTGAATGCCAAACAATATCAGGGCATTATAAGGCGAAGACAAGCTCGTGCTAAAGCCGAGGTTGAAAAGAAGCTGGTAAAAGACAGAAAGCCCTACCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGGCCAAGAGGAAGCGGAGGGCGTTTTGCCAAGAAAAACAAGATCGATACTTTAAACTGCCCTGCTGAATAA | 414 | 45.89 | MPTMHNEPITQPRQLELIGHTMTCAANPYQDSCMGEIMATYGHQPLFYPPFPGMPHGRMPLPLEMAQEPVYVNAKQYQGIIRRRQARAKAEVEKKLVKDRKPYLHESRHQHAMRRPRGSGGRFAKKNKIDTLNCPAE | 137 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1970179 | 1971992 | + | Bpe000306.1 | Bpe01g00318 | 97566 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe01g00318 | 137 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 68 | 123 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe01g00318 | 137 | PRINTS | CCAAT-binding transcription factor subunit B signature | 69 | 91 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe01g00318 | 137 | PRINTS | CCAAT-binding transcription factor subunit B signature | 100 | 123 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe01g00318 | 137 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 | 1 | 128 | - | - | |
Bpe01g00318 | 137 | MobiDBLite | consensus disorder prediction | 97 | 137 | - | - | |
Bpe01g00318 | 137 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 71 | 91 | IPR018362 | GO:0003677|GO:0016602 | |
Bpe01g00318 | 137 | Gene3D | - | 66 | 127 | - | - | |
Bpe01g00318 | 137 | MobiDBLite | consensus disorder prediction | 107 | 122 | - | - | |
Bpe01g00318 | 137 | SMART | cbf3 | 65 | 126 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe01g00318 | 137 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 1 | 128 | IPR001289 | GO:0003700|GO:0006355 | |
Bpe01g00318 | 137 | ProSiteProfiles | NF-YA/HAP2 family profile. | 66 | 126 | IPR001289 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe01g00318 | Bpe08g00276 | CCT | |
Bpe01g00318 | Bpe11g00922 | CCT | |
Bpe01g00318 | Bpe08g00276 | ECH | |
Bpe01g00318 | Bpe11g00922 | ECH | |
Bpe01g00318 | Bpe08g01208 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe01g00318 | Bpe-Chr1:1970179 | Bpe04g00547 | Bpe-Chr4:3473672 | 4.50E-44 | dispersed | |
Bpe01g00318 | Bpe-Chr1:1970179 | Bpe11g00922 | Bpe-Chr11:6817660 | 6.19E-50 | wgd | |
Bpe01g00318 | Bpe-Chr1:1970179 | Bpe08g00276 | Bpe-Chr8:1632726 | 6.51E-74 | wgd | |
Bpe01g00318 | Bpe-Chr1:1970179 | Bpe08g01208 | Bpe-Chr8:13749015 | 9.40E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20772 | PF02045 | CBFB_NFYA | 4.60E-28 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe01g00318 | K08064 | - | tcc:18589847 | 219.55 |