Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00318 ATGCCCACCATGCACAATGAACCTATCACACAACCTAGGCAACTCGAACTTATCGGTCACACTATGACTTGTGCAGCAAATCCATATCAGGATTCATGTATGGGAGAAATTATGGCCACTTATGGGCACCAGCCTTTGTTTTATCCTCCTTTTCCCGGAATGCCACATGGTAGAATGCCTTTGCCTCTTGAGATGGCTCAGGAGCCTGTTTATGTGAATGCCAAACAATATCAGGGCATTATAAGGCGAAGACAAGCTCGTGCTAAAGCCGAGGTTGAAAAGAAGCTGGTAAAAGACAGAAAGCCCTACCTTCATGAATCTCGCCACCAGCATGCAATGAGAAGGCCAAGAGGAAGCGGAGGGCGTTTTGCCAAGAAAAACAAGATCGATACTTTAAACTGCCCTGCTGAATAA 414 45.89 MPTMHNEPITQPRQLELIGHTMTCAANPYQDSCMGEIMATYGHQPLFYPPFPGMPHGRMPLPLEMAQEPVYVNAKQYQGIIRRRQARAKAEVEKKLVKDRKPYLHESRHQHAMRRPRGSGGRFAKKNKIDTLNCPAE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1970179 1971992 + Bpe000306.1 Bpe01g00318 97566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00318 137 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 68 123 IPR001289 GO:0003700|GO:0006355
Bpe01g00318 137 PRINTS CCAAT-binding transcription factor subunit B signature 69 91 IPR001289 GO:0003700|GO:0006355
Bpe01g00318 137 PRINTS CCAAT-binding transcription factor subunit B signature 100 123 IPR001289 GO:0003700|GO:0006355
Bpe01g00318 137 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 1 128 - -
Bpe01g00318 137 MobiDBLite consensus disorder prediction 97 137 - -
Bpe01g00318 137 ProSitePatterns NF-YA/HAP2 subunit signature. 71 91 IPR018362 GO:0003677|GO:0016602
Bpe01g00318 137 Gene3D - 66 127 - -
Bpe01g00318 137 MobiDBLite consensus disorder prediction 107 122 - -
Bpe01g00318 137 SMART cbf3 65 126 IPR001289 GO:0003700|GO:0006355
Bpe01g00318 137 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 128 IPR001289 GO:0003700|GO:0006355
Bpe01g00318 137 ProSiteProfiles NF-YA/HAP2 family profile. 66 126 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00318 Bpe08g00276 CCT
Bpe01g00318 Bpe11g00922 CCT
Bpe01g00318 Bpe08g00276 ECH
Bpe01g00318 Bpe11g00922 ECH
Bpe01g00318 Bpe08g01208 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00318 Bpe-Chr1:1970179 Bpe04g00547 Bpe-Chr4:3473672 4.50E-44 dispersed
Bpe01g00318 Bpe-Chr1:1970179 Bpe11g00922 Bpe-Chr11:6817660 6.19E-50 wgd
Bpe01g00318 Bpe-Chr1:1970179 Bpe08g00276 Bpe-Chr8:1632726 6.51E-74 wgd
Bpe01g00318 Bpe-Chr1:1970179 Bpe08g01208 Bpe-Chr8:13749015 9.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20772 PF02045 CBFB_NFYA 4.60E-28 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00318 K08064 - tcc:18589847 219.55