Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00340 ATGGTCATCAAGCTAAAAGAAGAGCTCATCATGAACTCCTTCAAAACAATCGATGGTCGCGGCGTCAGCGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACCAACATCATAATTCACGGCCTCAACATTCACGATTGCAAGGCCGGAGGAAACGCCTACGTGAGAGACTCCCCGGACCATTACGGGTGGCGTACGAGGTCGGACGGAGATGGGGTTTCGATCTTCGGAGGAAGCCATATTTGGGTGGACCATTGCACTCTGTCAAACTGCAATGATGGTCTGATAGACGCCATTCAAGGATCTACAGCCATTACCATATCCAACAATTATATGACTCACCATAACAAAGTCATGCTCTTGGGCCACAGCGATTCCTACCCACTAGACAAGAACATGCAAGTGACCATAGCTTTCAACCATTTCGGAGAAGGACTAGTCCAGAGAATGCCCAGGTGCAGGCATGGGTATTTCCATGTCGTGAATAATGACTATACGCATTGGGAGATGTACGCGCTTGGAGGTAGTGCGGGTCCGACAATCAACAGCCAAGGCAACAGATTTGTAGCGCCAAACGACGCCGACAGCAAAGAGGTGACGAAGCACGAGGACGCAGCAGAGAAAGAATGGAGAAAGTGGAATTGGAGGTCGGAGGGAGATTTGATGCTAAACGGAGCGTTTTTCACGAGATCTGGTGCAGGCGCATCTTCCAACTACGCTAAGGCGTCGAGTCTGAGCGCAAGGCCCTCGTCGCTTGTCAGTTCACTCACCGGCGGCGCCGGTGCTCTTAGTTGCAAGAAGGGTTCTCGCTGCTGA 825 51.64 MVIKLKEELIMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGLNIHDCKAGGNAYVRDSPDHYGWRTRSDGDGVSIFGGSHIWVDHCTLSNCNDGLIDAIQGSTAITISNNYMTHHNKVMLLGHSDSYPLDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSAGPTINSQGNRFVAPNDADSKEVTKHEDAAEKEWRKWNWRSEGDLMLNGAFFTRSGAGASSNYAKASSLSARPSSLVSSLTGGAGALSCKKGSRC 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2143751 2145082 - Bpe000330.1 Bpe01g00340 97588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00340 274 Pfam Pectate lyase 12 191 IPR002022 -
Bpe01g00340 274 PANTHER PECTATE LYASE 1 271 - -
Bpe01g00340 274 SMART amb_all 1 197 IPR002022 -
Bpe01g00340 274 PANTHER PECTATE LYASE 18-RELATED 1 271 IPR045032 GO:0030570
Bpe01g00340 274 Gene3D - 1 267 IPR012334 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 245 268 IPR018082 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 174 193 IPR018082 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 216 240 IPR018082 -
Bpe01g00340 274 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Bpe01g00340 274 SUPERFAMILY Pectin lyase-like 1 273 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00340 Bpe-Chr1:2143751 Bpe15g00661 Bpe-Chr15:17324303 2.72E-169 dispersed
Bpe04g01058 Bpe-Chr4:7873781 Bpe01g00340 Bpe-Chr1:2143751 1.53E-160 transposed
Bpe01g00340 Bpe-Chr1:2143751 Bpe08g00306 Bpe-Chr8:1832348 5.23E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00340 K01728 - mnt:21410245 519.235