Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00368 ATGGCTGTAACTGCTATCTTCTCACCTTGTCTTCTCCTCCTCGTTCTCTTATTCTTCTTCTTCTCCACCCCACATAACGCACAGCCAGATTTCCGTTACCACGTATGCAATGACGGCAATGGGAATTACACTGCCAACGACGCCTACAGCGCCAACCTCCACAACCTCCTCTCCTCCATTGTGACACTTGACTACGTCTACTACGGATTTTTCAATTTCTCTCTCGGCCAAAATTCCAACGCCGCCAACGCAATCGGGCTTTGCAGGGGCGACATCGATTCCGCTGCTTGCCGGAGCTGCCTAAACGACTCTAGGATCCTCCTCCCGCGACTTTGTCCGAATCGGAAGGAAGCTATCGGGTGGTACAATACCTGCATGTTGAAATACTCCAATCGGAGCATATTTGGATTGATGGAGACCGATCCAGCCCATATTATATGGACTACAGCAAACGTTTCGGATTGGGATCAGTATTACAGAGATCTTCGGACATTGTTGGATGATTTGAAAGGTAAAGCTGCGGGCGGTAGCTCTCTGTTAAAATATGAGGCAGGAAGTGCCCCGACGTCGAATTTCAGAACTCTCTTTGCTCTTCTACAGTGTACACCTGATTTGTCTGAGGAAGAATGCGACAATTGCTTGACTACCTCGATTAGTAGAATTCCATCTTGTTGTTCTGGGAGTGTTATAGTGGGTTCACCTAGTTGTTATTTGAGATACGAAGAGTATCGGTTCTATCAGCCTTCTTTGCCGCAATCGCCGCCGCCTCTGCTATCCCCCCCTCCAGCAAGAGTAGGCGAAGAAGTAAAGGAGAAGGATACCTCTCGAATTGTCATTGTCATTGTTCCGCCTATTGTTGGTGCGTTGGTCGTAATTTCTTTGATTTGTATCTTCATCTGGTTTAGGAGAAAGAGAAGCGATGAAAGGGCTGGTGATGTAAAGACGGAAGCGTCCTTACAATTCGACTTTGAAACCATTAGAAACGCCACGGATAATTTCTCCGAGGAAAATAAGCTTGGAGAGGGCGGATTTGGAGCTGTTTACAAGGGGAAGCTTTCAGATGGACAAGCCATAGCAGTGAAAAGGCTATCTGGGAATTCTGCACAAGGAGATGTGGAGTTCAGGAATGAAGTCCTGTTGGTCGCTAAGCTACAGCATAGGAATTTAGTAAGGCTTCTTGGATTCTGTTTAGAGAGAAATGAAAGGGTTCTCGTCTATGAGTTTGTTCCCAACACCAGCCTTGATCGTTTCATCTTTGATCCAGTCAAACGCCACAATTTACGATGGGAAAACCGGTTCGATATCATTTCAGGGATAGCTCGTGGACTCCTGTATCTCCACGAAGACTCCCAACTTAGAATCATTCATCGTGATTTGAAAGCTAGTAATGTGCTGCTCGATGCAATGCTCAAACCAAAAATTGCAGATTTTGGCCTGGCAAAGTTGTTTGAGCTAGATCAAACTGTTGGCAACACTTCCAAGATTGCAGGAACATTCGGATATATGGCTCCAGAGTATGTGCATCAAGGGCAATTTTCAGTCAAATCAGATGTATATAGTTTTGGTGTTATAGTTTTGGAAATTGTGAGTGGCCGAAGTCAGAATAATTTGATATCCGGAAAAGGGGAGAGCACAGAACACCTTTTGGGCTACGTAAGTATTGACACCAAAATCATGAACACTTAA 1686 45.26 MAVTAIFSPCLLLLVLLFFFFSTPHNAQPDFRYHVCNDGNGNYTANDAYSANLHNLLSSIVTLDYVYYGFFNFSLGQNSNAANAIGLCRGDIDSAACRSCLNDSRILLPRLCPNRKEAIGWYNTCMLKYSNRSIFGLMETDPAHIIWTTANVSDWDQYYRDLRTLLDDLKGKAAGGSSLLKYEAGSAPTSNFRTLFALLQCTPDLSEEECDNCLTTSISRIPSCCSGSVIVGSPSCYLRYEEYRFYQPSLPQSPPPLLSPPPARVGEEVKEKDTSRIVIVIVPPIVGALVVISLICIFIWFRRKRSDERAGDVKTEASLQFDFETIRNATDNFSEENKLGEGGFGAVYKGKLSDGQAIAVKRLSGNSAQGDVEFRNEVLLVAKLQHRNLVRLLGFCLERNERVLVYEFVPNTSLDRFIFDPVKRHNLRWENRFDIISGIARGLLYLHEDSQLRIIHRDLKASNVLLDAMLKPKIADFGLAKLFELDQTVGNTSKIAGTFGYMAPEYVHQGQFSVKSDVYSFGVIVLEIVSGRSQNNLISGKGESTEHLLGYVSIDTKIMNT 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2314013 2316206 + Bpe000357.1 Bpe01g00368 97616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00368 561 Gene3D Phosphorylase Kinase; domain 1 298 408 - -
Bpe01g00368 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Bpe01g00368 561 Pfam Protein kinase domain 334 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00368 561 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 551 - -
Bpe01g00368 561 ProSiteProfiles Protein kinase domain profile. 333 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00368 561 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Bpe01g00368 561 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Bpe01g00368 561 Gene3D - 141 245 IPR038408 -
Bpe01g00368 561 Gene3D - 28 133 IPR038408 -
Bpe01g00368 561 SUPERFAMILY Protein kinase-like (PK-like) 318 534 IPR011009 -
Bpe01g00368 561 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Bpe01g00368 561 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 551 - -
Bpe01g00368 561 Gene3D Transferase(Phosphotransferase) domain 1 409 556 - -
Bpe01g00368 561 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Bpe01g00368 561 CDD STKc_IRAK 339 532 - -
Bpe01g00368 561 SMART serkin_6 333 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00368 561 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00368 - - - gmx:102662291 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00368 Bpe-Chr1:2314013 Bpe08g00332 Bpe-Chr8:1974714 0 dispersed
Bpe14g00695 Bpe-Chr14:5452841 Bpe01g00368 Bpe-Chr1:2314013 2.13E-35 dispersed
Bpe01g00367 Bpe-Chr1:2310414 Bpe01g00368 Bpe-Chr1:2314013 1.51E-178 tandem
Bpe01g00368 Bpe-Chr1:2314013 Bpe01g00369 Bpe-Chr1:2331802 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g333 . . . . . . . . Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe01g00368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000015 3 19 7 13 7 16 3 13 12 17 12 14 9 15 15 13 16 4 8 10 15 7 11 9 5 24 13 11 18 8 347
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63113 PF00069 Pkinase 2.50E-46 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00368 Bpe_Chr01 FPKM 5.027041 6.078978 4.767131 4.292959 10.826509 9.23673 12.168649 5.43146 5.280161 5.644614