Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00378 ATGGCGATTCAGGTGCCTCATGATTTCAAGTGTCCGATTTCGCTGGAGATAATGACCGACCCGGTTATTCTTTCATCGGGTCATACCTTTGATCGAGCCTCAATCCAACGGTGGCTCGATACTGGCCACCGGAATTGCCCAATTACTCTTCTTCCCCTTTCTGAATATCCTTTACTCATTCCTAATCACGCTCTCAGAAGCTTAATTTCTAACTATACCCTCCTCGCACCGCCGAAACCACCATCTCTTCCGGAGCCCCAATACCTAATCTCTGCCCTAACTGCCCCGTCTTCTTCGCTGCAATCGAAACTCGATTCGCTTAACGAACTGGCTCGATTGTCGAAGCGCGACTCGGCGTTTCGTAGAAAGTTGACCGAGTCTGGTGTCGTCTCTCCAGTTCTTAAATGTGCTGGGTCCGGCGACTTAGGTCTTCAAGAGAAAGCACTTGCTTTATTGCTGAATCTCAGTTTAGATGACGATAACAAAGTTGGTTTGGTTGCGGAAGGTGCAATTGTGTTTATCGTGGCTTCTCTACGCTGTAGCTCGTCGGATTGTCGAGCATTGGCGGCGACGATACTGACAAGCTTGGCAGTTGTGGAGGTTAACAAAGTCACAATTGGAGAATACCCGCTCGCAGTTCAAGCGTTAGTTTCGCTTCTGCGAGATGGAAGAAGCCGAGAGAAGAAAGAAGCGGCTACGGCACTTTATGCCATATGTTCATTCCCGGAAAATCGACGGCGAGCGGTGGGATGTGGGGCTGTCCCGATTCTGATCCATATCGCGGACTCTGGCCTTGAAAGGGCTATTGAAGTTCTGGGACTGCTGGCAAAATGCAAGGAAGGTCGAGAAGAGATGCAAAGATCAGAGGGATGCTTGCAGATATTCGTTCGTGTATTGAGGAACGGAAGCTCAAGAGGAGTTCAATACGCTCTTCTAACTCTCAGTTCTATCTGTTGCTACTCCGATCAAATGTGTTTAGAAGCTAGTAGAGAAGGCGCTTTGGATGTGGCCATGGCTTTAGTTGACGATGACAATGTAAAGATTAGGAAAAATGCTTCATATTTGGTCCGGGTTCTGCGAGGTAATGATTTTTCCCGGTGA 1101 48.23 MAIQVPHDFKCPISLEIMTDPVILSSGHTFDRASIQRWLDTGHRNCPITLLPLSEYPLLIPNHALRSLISNYTLLAPPKPPSLPEPQYLISALTAPSSSLQSKLDSLNELARLSKRDSAFRRKLTESGVVSPVLKCAGSGDLGLQEKALALLLNLSLDDDNKVGLVAEGAIVFIVASLRCSSSDCRALAATILTSLAVVEVNKVTIGEYPLAVQALVSLLRDGRSREKKEAATALYAICSFPENRRRAVGCGAVPILIHIADSGLERAIEVLGLLAKCKEGREEMQRSEGCLQIFVRVLRNGSSRGVQYALLTLSSICCYSDQMCLEASREGALDVAMALVDDDNVKIRKNASYLVRVLRGNDFSR 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2372105 2373205 - Bpe000366.1 Bpe01g00378 97626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00378 366 SMART arm_5 158 198 IPR000225 GO:0005515
Bpe01g00378 366 SMART arm_5 199 240 IPR000225 GO:0005515
Bpe01g00378 366 SMART arm_5 278 319 IPR000225 GO:0005515
Bpe01g00378 366 SMART arm_5 241 277 IPR000225 GO:0005515
Bpe01g00378 366 SMART arm_5 321 361 IPR000225 GO:0005515
Bpe01g00378 366 SMART arm_5 117 157 IPR000225 GO:0005515
Bpe01g00378 366 SUPERFAMILY ARM repeat 88 359 IPR016024 -
Bpe01g00378 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 360 - -
Bpe01g00378 366 SUPERFAMILY RING/U-box 3 73 - -
Bpe01g00378 366 Pfam U-box domain 5 72 IPR003613 GO:0004842|GO:0016567
Bpe01g00378 366 Gene3D - 86 265 IPR011989 -
Bpe01g00378 366 Gene3D - 266 364 IPR011989 -
Bpe01g00378 366 PANTHER U BOX DOMAIN-CONTAINING 1 360 - -
Bpe01g00378 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bpe01g00378 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Bpe01g00378 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bpe01g00378 366 CDD RING-Ubox_PUB 9 49 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00378 Bpe-Chr1:2372105 Bpe08g01367 Bpe-Chr8:14743875 3.24E-62 dispersed
Bpe01g00378 Bpe-Chr1:2372105 Bpe02g01924 Bpe-Chr2:21211809 7.08E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00378 - - zju:107421885 508.834