Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00390 ATGACAAAGATTGAAAATTGGCTGAGTTGCTTCCCAGGGAACTTCACCTCTTTAGATACTGTTAAAAAAATTACTTATCACGAGCTTTCTCTTTGTCAGTTGGCAGAGCTCGAAAATTCATTTAGCAGTTGCAAAAATCTGCATACTCTCTCTGGTTTATTAGATGCTGCTCCTTTAACTCTCCACGTTTTCTACCCTGCATTGACTGACTTGACATTTGAATACATTGGAAAGTATGCCAAAAACTTGGAAACACTATCTGTGGCTTTCGCAGCCGACTGTCCATTTGGAAATGCAGCATTGCTTTCTGGCTTGGAGAAGTATGAATTGATGAGGTCGCTTTGGATGGTAAAATCATTGATCTTCTTGTCTGATGGGCGGGTTCTCGAAAAAGGCGACCAAACTCCGGTGACTGTTGCCGATTTTGGGGTGCAGGCTTTGATCAGTTTGGAATTGGGAAAACTGTTTCCATCTATCCCGTTGGTAGCCGAAGAGGACTCGGCATTTATACGATCAAATAATTTGACAGATGCTGTAGTGAGTGCAGTACTTGACAAAACGGGTTTTCAAGATGAACCATGGATGCAGGATGAGGTACTGGGAGCCATTGACAGAGGGGGGAAGGCCACATTTGGAACCGCACCAGCCACATATTGGGTACTAGATCCGATTGATGGTACAAGGGGATTTTTAAAAGGAAGCGACGCCTTATACGTAGTAGGTTTGGCTCTTGTGGTCGAAGGAGAGATTGTTATTGGTGTCATGGGCTGTCCTAACTGGTCAGATGATTTTGCTGATAAATCCACCGTGAATGTCCCGAGAAATGAAAATGATTTTTTGAAATCAGGGATCATAATGATTGCTCATGTTGATTGTGGAACGTGGAAAAAGAAGTTACCTTATATGCTGAATGACCAGAATAACATGCCTCAGAGTTGGACCAAATGCTTTGTCGATGAGCATTCTGTCATCGAAGCAGCTCGATTCTGTATTTCAGACAGTCAAACATGGGAATCACTGCCTCTTTCAGCTTTATTTAAGGCAACAACTAACATGACTAAGATCGGGAATAGCCGAATTCTTCTTTTGCCAACTTGTTGTGGAAGTTTATGCAAGTATTTGATGGTTGCCACTGGGCGGGCAGCTGTTTTCGTTCTTCGAGCAAAATCTCAGACCATTAAGGCTTGGGATCACGCTGTTGGGATGATATGTGTGCAAGAAGCTGGTGGAAAGGTAACCGACTGGGACGGGAGTGAAATCGATCTATCTGCAGATAAAGCCGGACGAAGGGTTATAGTTCCTTCAGGTGGAGTTCTAGCAACAAATGGCAACCTTCATAATCAGATCATAGAAATGACTTCTTCCAATTCATCATACTTTTGA 1383 42.95 MTKIENWLSCFPGNFTSLDTVKKITYHELSLCQLAELENSFSSCKNLHTLSGLLDAAPLTLHVFYPALTDLTFEYIGKYAKNLETLSVAFAADCPFGNAALLSGLEKYELMRSLWMVKSLIFLSDGRVLEKGDQTPVTVADFGVQALISLELGKLFPSIPLVAEEDSAFIRSNNLTDAVVSAVLDKTGFQDEPWMQDEVLGAIDRGGKATFGTAPATYWVLDPIDGTRGFLKGSDALYVVGLALVVEGEIVIGVMGCPNWSDDFADKSTVNVPRNENDFLKSGIIMIAHVDCGTWKKKLPYMLNDQNNMPQSWTKCFVDEHSVIEAARFCISDSQTWESLPLSALFKATTNMTKIGNSRILLLPTCCGSLCKYLMVATGRAAVFVLRAKSQTIKAWDHAVGMICVQEAGGKVTDWDGSEIDLSADKAGRRVIVPSGGVLATNGNLHNQIIEMTSSNSSYF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2420989 2429648 - Bpe000378.1 Bpe01g00390 97638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00390 460 Gene3D - 318 456 - -
Bpe01g00390 460 CDD PAP_phosphatase 123 452 - -
Bpe01g00390 460 PANTHER PAP-SPECIFIC PHOSPHATASE, MITOCHONDRIAL-RELATED 117 458 - -
Bpe01g00390 460 Gene3D - 112 304 - -
Bpe01g00390 460 Pfam Inositol monophosphatase family 133 453 IPR000760 GO:0046855
Bpe01g00390 460 PANTHER PHOSPHATASE 117 458 - -
Bpe01g00390 460 ProSitePatterns Inositol monophosphatase family signature 1. 219 232 IPR020583 -
Bpe01g00390 460 SUPERFAMILY Carbohydrate phosphatase 117 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00390 K01082 cysQ, MET22, BPNT1; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] - jre:108987278 485.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00390 Bpe11g00497 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00390 Bpe-Chr1:2420989 Bpe10g00263 Bpe-Chr10:9901029 1.40E-30 dispersed
Bpe01g00390 Bpe-Chr1:2420989 Bpe11g00497 Bpe-Chr11:3831520 9.10E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g277 Blo03g00636 . Bda07g00281 . . . . . . . . Cma09g00889 Car01g01014 Car09g00806 Sed04g3152 Cpe06g00712 Cpe02g00719 Bhi09g02007 Tan01g4439 Cmetu04g1200 . Hepe01g1361 Mch11g1105 . Cla11g01794 Cam11g1859 Cec11g1883 Cco11g1890 Clacu11g2021 Cmu11g1829 Cre11g2235 Cone6ag0120 . . . Lsi04g01292 . . . . . . . Bpe11g00497 Bpe01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008428 1 1 1 0 1 2 1 1 1 1 1 3 1 1 1 1 3 2 1 1 1 1 1 0 1 1 1 1 2 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00390 Bpe_Chr01 FPKM 36.27528 36.274597 26.376486 25.440727 31.647295 37.325283 31.268141 36.760677 37.236725 34.58395