Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00396 AAAAACTCTGCCAAAATGAACGATCTCTTCTCCGGCTCGTTCAAAAAGTATGCAGACCTGAAGCAGCAGGCCTACCTAGACGGCATGGAGGCCGGCAAGGAGAGCATAAATCTCGACAAGTTCTTCGAAGACATTGACAATGTGAAGGAAGACATGAAACAAGTGGAAAATCTCTACAAGAAACTGCAGGAAGCGAATGAGGAATGCAAAGTTGCCCACAATGCCAAAACCATGAAAGAACTTAGAGCAAGAATGGATCATGACGCCAGCCAGGTTTTAAAAAGAGTCAAAATGATCAAAGCAAAGCTCGAAGCCCTCGAACGATCAAACGCAGCCCATCGAAGCCTTCCAGGGTGCGGCCCGGGCTCATCTGCCGACAGAACAAGAACCTCGGTTGTAAGTGGATTGGGGAAGAAACTAAAAGACATAATGGATGATTTTCAGAGCTTAAGAAGTAGAATGAATGCAGAATATAAGGAAACAGTTGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACCATTGAAAATCTAATCTCGAGTGGAGAAAGCGAAAATTTTCTGCAGAAAGCAATTCAAGAACAGGGCAGAGGCCAAATAATGGACACCATATCAGAAATACAAGAAAGACACGATGCAGTGAAGGAGATCGAGAAAAACCTCATTGAGCTTCACCAGATATTTCTGGACATGGCTGCTCTGGTCGAGGCTCAGGGGCATCAGCTCAACGACATAGAGAGTCACGTTGCCCATGCAAATTCGTTCGTCCGGCGAGGGACAGAGCAGCTTCAAGAGGCCAGAGAATCTCAGAAGAGCTCGAGGAAATGGACCTGCATTGCCATAGTTCTTGGTGCAGTGCTTGTTGCTGTTCTTCTCTTCCCACTTCTATCATCCATTTTGCCTCACCTGTTGTAG 927 45.74 KNSAKMNDLFSGSFKKYADLKQQAYLDGMEAGKESINLDKFFEDIDNVKEDMKQVENLYKKLQEANEECKVAHNAKTMKELRARMDHDASQVLKRVKMIKAKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDIMDDFQSLRSRMNAEYKETVERRYFTITGEKANEETIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARESQKSSRKWTCIAIVLGAVLVAVLLFPLLSSILPHLL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2457994 2458920 + Bpe000383.1 Bpe01g00396 97644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00396 308 Coils Coil 89 109 - -
Bpe01g00396 308 CDD SynN 38 195 IPR006011 GO:0016020
Bpe01g00396 308 SMART tSNARE_6 203 270 IPR000727 -
Bpe01g00396 308 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Bpe01g00396 308 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Bpe01g00396 308 Pfam SNARE domain 245 296 IPR000727 -
Bpe01g00396 308 SMART SynN_4 33 159 IPR006011 GO:0016020
Bpe01g00396 308 CDD SNARE_syntaxin1-like 207 269 - -
Bpe01g00396 308 PANTHER SYNTAXIN 12 300 IPR045242 -
Bpe01g00396 308 Gene3D - 38 165 - -
Bpe01g00396 308 Coils Coil 38 75 - -
Bpe01g00396 308 Gene3D - 197 300 - -
Bpe01g00396 308 PANTHER T-SNARE-RELATED 12 300 - -
Bpe01g00396 308 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bpe01g00396 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00396 Bpe-Chr1:2457994 Bpe04g01486 Bpe-Chr4:21389123 1.91E-114 dispersed
Bpe07g00233 Bpe-Chr7:1658418 Bpe01g00396 Bpe-Chr1:2457994 2.10E-10 dispersed
Bpe07g00604 Bpe-Chr7:12739294 Bpe01g00396 Bpe-Chr1:2457994 1.76E-62 transposed
Bpe01g00396 Bpe-Chr1:2457994 Bpe08g00351 Bpe-Chr8:2103594 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00396 K08486 - csv:101217140 530.791