Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00425 ATGCATCGCCACAACTTCTGCAAAACGCTAGTGGAAAATGCAATTAATGGCAGACACTATTACACTAATCGCCTGAAAATGACGACTCTTTTTTCCATAATCAGTCCGCTCGGCAATCCTGGCACAAGTGTCGTGCCTGAGCTCGATGACTGGGTCCACAAGGGTAAAAAAGTTGGAGTCGCTGAGCTTCAGCGCATCATTCACGATCTTCGCAAGCGCAAAAGATTCGCTCAAGCTCTCGACGTTTTGGAGTGGATGAAGGAAAAGGGAATCTGCGTATTGTCACCGAGTGAGCATGCCGTGGAGTTGGATCTGATTGGGAAAGTTCGAGCGTTTCTTTCAGCTGAAAATGATTTCGCCAAGTTGAATGATCAGAACAAGACTGATAAAACATATGGAGCTCTCCTTAATTGTTATGTCCGGCAGCGCCAAACCAATAAAGCCCTTACAATGACATCTGGTCAGCACGAAAAGGTTGCAGAGGTGCCATTGGAGATGACGAACAATGGAGTTCGCCCTGACAATTTCAGTTACAGAATATGCATCAATTCCTATGGTGCGAGATCTGATCTTGAGGGAGTGGAGAAACTACTGACAGAGATGGAGAGCCAATCTCACACTCTCATGTACTGGAACAGTTTTGCCGTGGCTGCCAATTTTTTCAATCAAGCTGGTCAAACTGAAAGGGCTCTTGACGCCCTAAAAAAGTCAGAGAGGCTGGATAAAAAAAAGATGGATAACTTTCTAATCACACTATACGCAAGTTTTGGGAGCAAAGAGGAGGTGTTAAGACGGCTTGCGCAGTCTTTGATAAAGCTCGATCAATTTGAAGAAGCGGAAAAAGTACTCAAGGATTGGGAATCATCTGGGAACTTTTATGATTTTCGAGTGCCGAATACTGTTATTATCGGGTATTTGAACAAAGCAATGCCGAGAAAGGCCGAATCTTTACTTCTCGACTGTAAATCGAAAGGAAAGCTGACCGCCCAGAACAGTTGGGGAAAAGTGTCGGCTGGGTATGTGAACGAAGAGAAGATGGAGGAAGCTACAGAATGCATGAAGACGGCTCTTTTGCTGCCAATGGAAAAAGGGTGGAAGCCCAATCTAAGGGCGATCTCGAGCATATTGAGTTGGTTGGGCGAGGGAGGCAGTGTGGGAGATGTAGAAGCTTTCGTCTGCTCTTTGAAAAACGCCATCAATGCTGACAGAGAGATGTATCATGCCCTGATCAAGGCGTACATAAGGAGTGGCAGAGAAGTGGCGAGACTTTTGGACGACATGAAACGGGACAAAATTGGTGAAGATGAAGAAACAAAGAGCAAACTTGCAAAGGCTCGATTACCATCCCTCTTTTTCCAAATTTTAGTTCATGATTCACAGCCAAGTTTTACAGAGAATTTGTTCCCTTTGGAATCCAAATTAACGAATTAA 1431 44.65 MHRHNFCKTLVENAINGRHYYTNRLKMTTLFSIISPLGNPGTSVVPELDDWVHKGKKVGVAELQRIIHDLRKRKRFAQALDVLEWMKEKGICVLSPSEHAVELDLIGKVRAFLSAENDFAKLNDQNKTDKTYGALLNCYVRQRQTNKALTMTSGQHEKVAEVPLEMTNNGVRPDNFSYRICINSYGARSDLEGVEKLLTEMESQSHTLMYWNSFAVAANFFNQAGQTERALDALKKSERLDKKKMDNFLITLYASFGSKEEVLRRLAQSLIKLDQFEEAEKVLKDWESSGNFYDFRVPNTVIIGYLNKAMPRKAESLLLDCKSKGKLTAQNSWGKVSAGYVNEEKMEEATECMKTALLLPMEKGWKPNLRAISSILSWLGEGGSVGDVEAFVCSLKNAINADREMYHALIKAYIRSGREVARLLDDMKRDKIGEDEETKSKLAKARLPSLFFQILVHDSQPSFTENLFPLESKLTN 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2600323 2601986 - Bpe000410.1 Bpe01g00425 97673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00425 476 PANTHER OS07G0598500 PROTEIN 17 150 - -
Bpe01g00425 476 Gene3D Tetratricopeptide repeat domain 43 206 IPR011990 GO:0005515
Bpe01g00425 476 PANTHER OS07G0598500 PROTEIN 149 443 - -
Bpe01g00425 476 Coils Coil 60 80 - -
Bpe01g00425 476 Coils Coil 259 279 - -
Bpe01g00425 476 Gene3D Tetratricopeptide repeat domain 330 448 IPR011990 GO:0005515
Bpe01g00425 476 PANTHER OS12G0527900 PROTEIN 149 443 - -
Bpe01g00425 476 PANTHER OS12G0527900 PROTEIN 17 150 - -
Bpe01g00425 476 Pfam PPR repeat 176 203 IPR002885 -
Bpe01g00425 476 Pfam PPR repeat 131 150 IPR002885 -
Bpe01g00425 476 SUPERFAMILY TPR-like 228 369 IPR011990 GO:0005515
Bpe01g00425 476 Gene3D Tetratricopeptide repeat domain 214 291 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00425 - - - jre:108990640 521.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00425 Bpe-Chr1:2600323 Bpe10g00419 Bpe-Chr10:11636923 5.86E-52 dispersed
Bpe01g00425 Bpe-Chr1:2600323 Bpe03g00832 Bpe-Chr3:28233919 7.91E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g115 . . Bda02g00529 . . Bpe01g00425 . . . Cmo18g00344 . . . . . Cpe09g00844 . . . . . . . . . . . . . . . . . . . . . Chy12g00940 . . Blo14g00390 . . . . . . . . . . Cma18g00365 . Car18g00344 . . . . . . . . . Cla03g00559 Cam03g0604 Cec03g0583 Cco03g0613 Clacu03g0602 Cmu03g1202 Cre03g0889 Lsi02g00746 Csa01g01224 . Cme12g01353
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00425 Bpe_Chr01 FPKM 9.030303 11.060922 9.616865 11.176851 19.151798 20.323936 21.127216 6.631753 7.088134 7.289576