Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00438 ATGGCGCCGAGGGAGAAGGTGGGTGGCACGAAGGGTAACGGAAGCGTAAAGGAGGTGCATTTCAGAGGAGTGAGGAAGAGACCGTGGGGGAGATACGCCGCCGAAATCAGAGATCCCTGCAAAAAGAGCCGCGTTTGGCTGGGGACGTTTGATACGGCGGAAGAGGCTGCTCGAGCATACGACGCTGCTGCTATAGAGTTTCGGGGAGCCAAAGCCAAAACTAACTTTCCCTTTCTTGTCGACGGTGTGACCACCAAAAACAATCCAAATCGGAGCCCTAGCCAGAGTAGCACTGTCGAGTCGTCCAGCCACGACCCGCCTCTTTCGCTTGATTCTCGACCGTTGAATCTCAACCTCGCTTACAATGGATTTCAACCAGCAGGAGGTATGAGGCTTCCGTTCGACCGCCGCCTCATCCCGTCACTTGGCGTAGCTTTCCCCGGCGGTGTCCCGGCCGCCAATCAAATTGTGTACTTTGATGCAGCTGTTAGAGCCGGGATGATGAAGAGTCATCAGTGCCAAAAGCTGAGATTTGTTCAGCCAGACAGATCGAAGAGTGACTCTGACTCATCCTCCGTCGTCGATATGACCCACCATGAACTGAACCCACGGAAGCTCCCCGATCTCGATCTCAATTTTCCTCCACCAGCCGACGCTTAG 660 54.7 MAPREKVGGTKGNGSVKEVHFRGVRKRPWGRYAAEIRDPCKKSRVWLGTFDTAEEAARAYDAAAIEFRGAKAKTNFPFLVDGVTTKNNPNRSPSQSSTVESSSHDPPLSLDSRPLNLNLAYNGFQPAGGMRLPFDRRLIPSLGVAFPGGVPAANQIVYFDAAVRAGMMKSHQCQKLRFVQPDRSKSDSDSSSVVDMTHHELNPRKLPDLDLNFPPPADA 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2691220 2691879 - Bpe000423.1 Bpe01g00438 97686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00438 219 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Bpe01g00438 219 MobiDBLite consensus disorder prediction 179 219 - -
Bpe01g00438 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 208 - -
Bpe01g00438 219 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 MobiDBLite consensus disorder prediction 83 109 - -
Bpe01g00438 219 MobiDBLite consensus disorder prediction 179 206 - -
Bpe01g00438 219 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Bpe01g00438 219 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Bpe01g00438 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00438 K09286 EREBP; EREBP-like factor - jre:108983254 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00438 Bpe08g00389 CCT
Bpe01g00438 Bpe02g01898 CCT
Bpe01g00438 Bpe08g00389 ECH
Bpe01g00438 Bpe02g01898 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00438 Bpe-Chr1:2691220 Bpe02g01898 Bpe-Chr2:20973702 1.60E-30 dispersed
Bpe01g00438 Bpe-Chr1:2691220 Bpe11g00466 Bpe-Chr11:3616234 9.56E-33 wgd
Bpe01g00438 Bpe-Chr1:2691220 Bpe08g00389 Bpe-Chr8:2393308 3.10E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g129 . . Bda02g00518 . . Bpe01g00438 Bma14g01008 Bma01g00559 Cmo13g00649 Cmo18g00367 Cma03g01283 Cma07g00227 Car03g01147 Car07g00193 Sed14g1475 . . Bhi03g00387 Tan03g2500 Cmetu04g3164 . Hepe04g1868 . . Cla01g02265 Cam01g2380 Cec04g2024 Cco04g2104 Clacu01g2400 Cmu01g2264 Cre04g1931 Cone1ag0177 . Cone6ag0997 Cone9ag0999 Lsi01g00298 Csa06g03646 Chy12g00917 Cme08g00281 Blo08g00212 Blo14g00403 . . . Bpe08g00389 Bma07g00389 Bma11g00414 Sed08g2251 Cmo03g01277 Cmo07g00223 Cma13g00627 Cma18g00388 . Car18g00365 . Cpe20g00448 Bhi08g02272 Tan05g2453 Cmetu12g1906 Lac10g0904 Hepe07g1897 . . Cla03g00755 Cam03g0632 Cec03g0609 Cco03g0641 Clacu03g0799 Cmu03g1396 Cre03g0917 Lsi02g00776 Csa01g01252 Chy02g00280 Cme12g01327
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001952 1 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 3 4 2 2 2 2 2 2 2 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20784 PF00847 AP2 3.10E-15 CL0081 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00438 Bpe_Chr01 FPKM 20.963991 24.252522 4.276112 4.425048 0.0 0.465542 0.358042 9.967355 11.26829 10.309193