Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00439 ATGTACTCAGATTTCTGGTCCTCCCGCCTCGCCGCCGCTAAAAGACAATACAACTCCCTGCAGCACCACCAGAGCTCGCACTTAGATCGGTTAGCAATCGATGATTTTGAGGTGGATGAGGAGGTCCGACCCCATTTTTCGTGCCCCTACTGCTACGAGGATTTCGATATCTCGTTGCTTTGTTCCCATCTGGAAGATGAGCACTCGTGCGAGTCAAAAGTTACCGTTTGTCCGATTTGCTCCGGCAAAATTTCTCGGGACATGTTCCGTCACATTTTACTATTAATTACGATATTTTCTATCACAAGAAGCAGTGGATTTTATGTGCTATTCTATTTTTCCTTAACTGAACATCACCTCCAGAGACGGCGTAGATTACGTAAAGTCGCCACTCCAAACAGTGAAACTCTCTCTCTCTTGAGTCGGGATCTTCGAGAGGCACATCTGCAGGCGCTGCTGGGCGGTGGATATCGATCGAACAGTTCCAACGTGTCCACTGCACCAGTTGATCCATTTGTCTCATCACTCATTTTAAATTATCCTGCCTCAGAATTGGAAGAGATCTCTAAATCTGTGCTAAACAGCGCAGAAAACACTTCGGTTAAGAACGAGCCACTCTCGCATAAGTGGAAAACAAGTTTTGATCCATCATTGAGTCAAGAAGAACGAGAGAAAGGGAGGAGGCGAGCTGCGGGAAGAGCAGGGTTTATGCAAGATTTGCTTTTATCGACTCTCTTAGGCGACTAA 747 46.32 MYSDFWSSRLAAAKRQYNSLQHHQSSHLDRLAIDDFEVDEEVRPHFSCPYCYEDFDISLLCSHLEDEHSCESKVTVCPICSGKISRDMFRHILLLITIFSITRSSGFYVLFYFSLTEHHLQRRRRLRKVATPNSETLSLLSRDLREAHLQALLGGGYRSNSSNVSTAPVDPFVSSLILNYPASELEEISKSVLNSAENTSVKNEPLSHKWKTSFDPSLSQEEREKGRRRAAGRAGFMQDLLLSTLLGD 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2694153 2695866 - Bpe000424.2 Bpe01g00439 97687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00439 248 MobiDBLite consensus disorder prediction 204 230 - -
Bpe01g00439 248 Pfam Drought induced 19 protein (Di19), zinc-binding 45 93 IPR008598 -
Bpe01g00439 248 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 247 IPR033347 -
Bpe01g00439 248 MobiDBLite consensus disorder prediction 215 230 - -
Bpe01g00439 248 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 247 - -
Bpe01g00439 248 Pfam Stress-induced protein Di19, C-terminal 137 245 IPR027935 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00439 - - - qsu:112040972 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00439 Bpe-Chr1:2694153 Bpe02g01830 Bpe-Chr2:20461469 3.27E-23 dispersed
Bpe01g00439 Bpe-Chr1:2694153 Bpe09g00572 Bpe-Chr9:14506081 1.98E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g133 . . Bda02g00517 . . Bpe01g00439 . . . . Cma03g01284 Cma07g00226 Car03g01149 Car07g00192 Sed14g1479 . Cpe10g00181 Bhi03g00380 Tan03g2506 . . . . . Cla01g02268 Cam01g2381 Cec04g2025 Cco04g2105 Clacu01g2401 Cmu01g2265 Cre04g1932 . Cone5ag1694 Cone6ag0995 Cone9ag0997 Lsi01g00297 Csa06g03649 . Cme08g00279 . Blo14g00404 . . . . . Bma11g00415 . Cmo03g01279 Cmo07g00222 . . . . Cpe19g01032 . . . . . . . . . . . . . . . . . . .
Vvi19g176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe01g00439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003016 1 7 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 6 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20785 PF14571 Di19_C 5.90E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00439 Bpe_Chr01 FPKM 2.745646 3.188691 2.085933 2.538974 2.30677 2.679382 2.559738 3.874784 3.868888 4.507446