Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00452 ATGGGTTTCCCAGAAGAGCGTCTGGATGCAGTGTTGGTTAGTGCTGGATTTGCGATCATGTGTATTTATCACACCTTCCTATTTTACAGGTACTGCAAACAGTCGCATACCACAATGATGGGGGTGGAGAACAACCATAAGAGAGAATGGGTTCATCAGATTTTGCAGGCTGACAGGTCGAGTATTGCCAGCGCCGTGGCCGTGGTTTCAGCCAACATAACGGCATCGAATTACTTGGCAACCATATCTCTAACTCTATGCGCTCTTATCGGAGCTTGGATAGCCAACACCCGGTCGGTTTTCATGAGTGGTGTGATATTAGGAGACACTGGGGAAAATACCCTCTTCCTTAAGTACATATGCCTCTTGTTCTTTTTCCTCCTTGCGTTTACTTTCTTCGTTCAAGCTGTTAGAGGCTTTGTCCATGTTAACTATCTGATTACCATCCCAGCTAATAACTCACCGGAAGCTTTGTCATATATAGAAGATGCTGTTATAAGTGCAGGGGAGTTTTGGTCTGTTGGATTAAGATCACTTTACTTTGCTCTTAATTTCCTCCTCTGGTTTTTTGGGCCAATTCCCATGTTTATTTCTTCTATCATTATGGTTGGATTCCTCCATTTCCTTGACAGAAATACGAGAAAACATTTGGGATTCTCGAATCAAAGATCAAATAAATCTCAACAAGCTACTTTATGA 699 42.35 MGFPEERLDAVLVSAGFAIMCIYHTFLFYRYCKQSHTTMMGVENNHKREWVHQILQADRSSIASAVAVVSANITASNYLATISLTLCALIGAWIANTRSVFMSGVILGDTGENTLFLKYICLLFFFLLAFTFFVQAVRGFVHVNYLITIPANNSPEALSYIEDAVISAGEFWSVGLRSLYFALNFLLWFFGPIPMFISSIIMVGFLHFLDRNTRKHLGFSNQRSNKSQQATL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2757679 2758515 - Bpe000437.1 Bpe01g00452 97700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00452 232 PANTHER EMB|CAB89385.1 3 229 - -
Bpe01g00452 232 Pfam Protein of unknown function, DUF599 11 213 IPR006747 -
Bpe01g00452 232 PANTHER OS02G0292800 PROTEIN 3 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00452 - - - cic:CICLE_v10017559mg 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00452 Bpe08g00400 CCT
Bpe01g00452 Bpe08g00400 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00452 Bpe-Chr1:2757679 Bpe12g00706 Bpe-Chr12:12620248 4.82E-30 dispersed
Bpe01g00452 Bpe-Chr1:2757679 Bpe08g00400 Bpe-Chr8:2452731 2.64E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g154 . . . . . Bpe01g00452 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0984 Cone9ag0988 . . . . Blo08g00222 Blo14g00414 . . . Bpe08g00400 Bma07g00400 Bma11g00427 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015380 0 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 2 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00452 Bpe_Chr01 FPKM 17.86186 24.498377 1.754575 1.014421 20.839165 22.919268 16.480812 0.0 0.0 0.166978