Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00461 TGGTTTTCTATGGCGCGTAAAACACCATTTCTAAAGCAAACCCTAGCCACAATTTTATTGCTTCTCGCCATTTATGCTCTGATCAACACTTTTCTCCGCTCTTCCACCCCTTGCAATGATTCTCTCCCCTCCTCCTCTTCTAATTCCAACATCGTATCCCGCGAAAACAATCGCCTCGATTTTCTCGGAAGATTGTCGGAGCCTGTCAAAATCTACCTCTACGATGTGCCCAACAGGTTTACTTTTGGGGTCATCGAACAATATTACAATGCTCGCCCCGGTCAACCTCCGGCAGAAGTCGAGCAGCTCAAATATCCCGGCCACCAGTACATGGCGGAGTGGTTTCTTTTCTCGGATCTCCGACGACCCGAGTCTGATCGTGTTCGGTCCCCTGTCAAGAGGGTGTTCGATCCCGAAGAAGCGGATTTGTTCTACGTTCCGTTCTTCTCGTCCGTAAGTTTGGTCGTGAATCCGATTCGGCAGGGGACGGCGTCCACCCAAGAGCAGGGGACGGCGGTTTACAGCGACGAGGAAACGCAGGAGGCGTTAATGGAATGGTTGGAGGAGCAGGAGCATTGGAAGAGGAACAACGGGCGGGACCATGTGATCGTAGCTCAGGATCCGAATGCATTGTACAAAGTGATCGATAAAGTGAAGAACAGCATATTGCTGGTTTCGGATTTCGGACGATTGCGAGCAGACCAAGCATCGCTGGTGAAGGACGTGATCCTTCCTTATTCCCATCGAATCAACTCTTACAATGGTGACATTGGCGTTGGGGATCGCCATACCTTGTTATTTTTCATGGGAAATCGGTTTAGGAAAGAGGGAGGAAAAATACGAGATTTGCTCTTCAGAATTCTGGAGGAGGAGAAGGATGTTATCATAAAACATGGAGCCCAATCTCGAGAAAGTCGACGAGCCGCTTCCCAAGGGATGCATACATCTAAGTTCTGCTTAAATCCTGCTGGAGACACCCCCTCCGCCTGCCGGTTGTTCGACTCCATCGTCAGCCTTTGCATCCCGGTGATCGTCAGCAATCATATCGAGCTGCCGTTTGAAAATGTAATAGACTACAGAAAAATTGCAATATTTGTGGATTCTGAATCTGCTGTAAAGCCTGGATTCTTAATTTCGACTCTGTCTGCAGTTCCAACACAGAGAATTCTTGAATATCAAAAGGAGATGAATCAGGTGACAAGATACTTCAAGTACGAAGAAGAGGACGGAGCAGTTAACGAAATCTGGCGACAAATTTCTCAAAAGCTTGGACTGATTAAATTGATGATAAACCGGGAAAAAAGGCTGGTATTGAGAGAGTCGAAAAAGCCTGGGTGTTCTTGTATGTGTTCAAATGGGAGTGAGATTAGCTATGGCTCATGA 1383 47.36 WFSMARKTPFLKQTLATILLLLAIYALINTFLRSSTPCNDSLPSSSSNSNIVSRENNRLDFLGRLSEPVKIYLYDVPNRFTFGVIEQYYNARPGQPPAEVEQLKYPGHQYMAEWFLFSDLRRPESDRVRSPVKRVFDPEEADLFYVPFFSSVSLVVNPIRQGTASTQEQGTAVYSDEETQEALMEWLEEQEHWKRNNGRDHVIVAQDPNALYKVIDKVKNSILLVSDFGRLRADQASLVKDVILPYSHRINSYNGDIGVGDRHTLLFFMGNRFRKEGGKIRDLLFRILEEEKDVIIKHGAQSRESRRAASQGMHTSKFCLNPAGDTPSACRLFDSIVSLCIPVIVSNHIELPFENVIDYRKIAIFVDSESAVKPGFLISTLSAVPTQRILEYQKEMNQVTRYFKYEEEDGAVNEIWRQISQKLGLIKLMINREKRLVLRESKKPGCSCMCSNGSEISYGS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2822096 2823945 + Bpe000446.1 Bpe01g00461 97709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00461 460 PANTHER ARABINOSYLTRANSFERASE ARAD1-RELATED 2 442 - -
Bpe01g00461 460 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 2 442 IPR004263 GO:0006486|GO:0016757
Bpe01g00461 460 Pfam Exostosin family 67 379 IPR040911 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00461 K23200 ARAD; putative arabinosyltransferase [EC:2.4.2.-] - csv:101216577 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00461 Bpe-Chr1:2822096 Bpe02g01670 Bpe-Chr2:19359117 3.49E-83 dispersed
Bpe04g01218 Bpe-Chr4:17304574 Bpe01g00461 Bpe-Chr1:2822096 7.77E-79 transposed
Bpe11g00759 Bpe-Chr11:5741625 Bpe01g00461 Bpe-Chr1:2822096 1.94E-06 transposed
Bpe13g00294 Bpe-Chr13:10805854 Bpe01g00461 Bpe-Chr1:2822096 1.91E-68 transposed
Bpe01g00461 Bpe-Chr1:2822096 Bpe08g00410 Bpe-Chr8:2515648 3.89E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005267 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00461 Bpe_Chr01 FPKM 9.333333 7.500051 9.274953 6.486148 4.321678 4.756803 7.23049 6.017783 5.625885 2.568631