Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00481 AAAAGGAGATTGAAAGATTTGTTACTTCAGCAAGATAATCGCTTTTGTGCAGACTGTCGTGCTCCAGATCCCAAATGGGCGTCAGCCAATATTGGAGTTTTTGTGTGCTTAAAATGTTGTGGCGTTCACAGGAGCCTTGGTACTCATATATCAAAGGTACTATCTGTAACATTGGATGAATGGTCTAATGAGGAAATTGATTCCATGATTGAGGTGGGAGGAAATTCTTCTGCTAATTCAATATATGAAGCTTTTATTCCTGAAGGATATTCCAAGCCAAGACCAGATTCTAGCCACGAAGAACGATCGAAATACATTCGGTCTAAATATGAAAAGCAAGAATTTTTGAAACCTAGTTTGCGAATCTTATCAACCAACTCGGGAAGGAGTTCTCTACAAACAAGGCTTTCTAGAAAGATTATGAACAGTTTCCGCAGTAAAAGTTCTCAGAAATTGTTGCAGGAAGGCATGGTTGAGTTTATTGGGTTACTGAAAGTCAAAGTGATTAAAGGCACAAATTTGGCCATTAGGGATATGATGTCAAGCGATCCTTATGTCGTCTTGAATCTTGGAAACCAGACTGCTCAGACCACTGTGAAAAAAAGCAACTTGAATCCCATCTGGAATGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGACCCCTCAAATTGCGGGTCTTCGACCACGATACATTTTCAGCAGACGATATCATGGGAGAAGCAGAGATCGACCTGCAGCCGATGATAACATCAGCGACGGCATTTGGAGATGCAGGAATGTTTGGAAACATGCAGATTGGAAAATGGCTCAAGTCTCATGATAATGCTCTCATAGATGATAGCACTGTCAATATTGTAGACGGGAAGGTTAAACAAGATGTCTTTCTCAAGCTTCAGAACGTGGAATCAGGAGATTTAGATCTTGAGCTCGAATGGATGCCTCTTGATCAG 954 41.19 KRRLKDLLLQQDNRFCADCRAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDEWSNEEIDSMIEVGGNSSANSIYEAFIPEGYSKPRPDSSHEERSKYIRSKYEKQEFLKPSLRILSTNSGRSSLQTRLSRKIMNSFRSKSSQKLLQEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLNLGNQTAQTTVKKSNLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSATAFGDAGMFGNMQIGKWLKSHDNALIDDSTVNIVDGKVKQDVFLKLQNVESGDLDLELEWMPLDQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2985026 2988294 - Bpe024498 Bpe01g00481 97729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00481 318 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 115 IPR001164 GO:0005096
Bpe01g00481 318 CDD ArfGap 4 110 - -
Bpe01g00481 318 Pfam C2 domain 162 251 IPR000008 -
Bpe01g00481 318 PRINTS HIV Rev interacting protein signature 53 74 IPR001164 GO:0005096
Bpe01g00481 318 PRINTS HIV Rev interacting protein signature 32 49 IPR001164 GO:0005096
Bpe01g00481 318 PRINTS HIV Rev interacting protein signature 13 32 IPR001164 GO:0005096
Bpe01g00481 318 Gene3D C2 domain 160 318 IPR035892 -
Bpe01g00481 318 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 318 IPR044518 GO:0005096|GO:0005543
Bpe01g00481 318 CDD C2_ArfGAP 161 305 - -
Bpe01g00481 318 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 162 307 IPR035892 -
Bpe01g00481 318 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 318 - -
Bpe01g00481 318 ProSiteProfiles C2 domain profile. 145 259 IPR000008 -
Bpe01g00481 318 SMART arf_gap_3 2 123 IPR001164 GO:0005096
Bpe01g00481 318 SMART C2_3c 163 258 IPR000008 -
Bpe01g00481 318 Gene3D Arf GTPase activating protein 1 121 IPR038508 -
Bpe01g00481 318 SUPERFAMILY ArfGap/RecO-like zinc finger 2 118 IPR037278 -
Bpe01g00481 318 Pfam Putative GTPase activating protein for Arf 2 117 IPR001164 GO:0005096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00481 Bpe-Chr1:2985026 Bpe02g01040 Bpe-Chr2:11173192 1.39E-42 dispersed
Bpe08g01160 Bpe-Chr8:13376001 Bpe01g00481 Bpe-Chr1:2985026 2.24E-26 dispersed
Bpe13g00827 Bpe-Chr13:14547461 Bpe01g00481 Bpe-Chr1:2985026 2.59E-17 dispersed
Bpe14g00814 Bpe-Chr14:6138522 Bpe01g00481 Bpe-Chr1:2985026 6.35E-19 dispersed
Bpe01g00481 Bpe-Chr1:2985026 Bpe14g00079 Bpe-Chr14:1274072 3.15E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00481 K12486 - zju:107406254 561.607