Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00483 CTTGCTTACTTTTGTGTCTTCTTATCAGAAAATAGTGAAGCTGATGACCAGCAAAAACACACTGAATCCGAGAACCGGCCTTCATCTCCTCAGACTGGACTGTCTCATCATGGCATTTCAAATCCAACTCAGTATACGATGCCGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAGCCATATCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGACAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCGTATTTGCATGAATCTCGTCATTTACACGCACTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCAATATCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCATCCTAA 621 43.96 LAYFCVFLSENSEADDQQKHTESENRPSSPQTGLSHHGISNPTQYTMPSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAISGDELQTNLNLNNNKNDPASSDSAS 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2998489 3000596 + Bpe000466.1 Bpe01g00483 97731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00483 206 MobiDBLite consensus disorder prediction 13 52 - -
Bpe01g00483 206 MobiDBLite consensus disorder prediction 24 50 - -
Bpe01g00483 206 MobiDBLite consensus disorder prediction 174 206 - -
Bpe01g00483 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 MobiDBLite consensus disorder prediction 173 206 - -
Bpe01g00483 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Bpe01g00483 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 8 193 - -
Bpe01g00483 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 193 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 Gene3D - 110 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00483 Bpe-Chr1:2998489 Bpe04g00547 Bpe-Chr4:3473672 7.48E-34 dispersed
Bpe01g00483 Bpe-Chr1:2998489 Bpe08g00441 Bpe-Chr8:2786870 2.45E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20792 PF02045 CBFB_NFYA 3.30E-26 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00483 K08064 - jre:109011209 286.574