Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00483 CTTGCTTACTTTTGTGTCTTCTTATCAGAAAATAGTGAAGCTGATGACCAGCAAAAACACACTGAATCCGAGAACCGGCCTTCATCTCCTCAGACTGGACTGTCTCATCATGGCATTTCAAATCCAACTCAGTATACGATGCCGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAGCCATATCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGACAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCGTATTTGCATGAATCTCGTCATTTACACGCACTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCAATATCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCATCCTAA 621 43.96 LAYFCVFLSENSEADDQQKHTESENRPSSPQTGLSHHGISNPTQYTMPSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAISGDELQTNLNLNNNKNDPASSDSAS 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2998489 3000596 + Bpe000466.1 Bpe01g00483 97731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00483 206 MobiDBLite consensus disorder prediction 13 52 - -
Bpe01g00483 206 MobiDBLite consensus disorder prediction 24 50 - -
Bpe01g00483 206 MobiDBLite consensus disorder prediction 174 206 - -
Bpe01g00483 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 MobiDBLite consensus disorder prediction 173 206 - -
Bpe01g00483 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Bpe01g00483 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 8 193 - -
Bpe01g00483 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 193 IPR001289 GO:0003700|GO:0006355
Bpe01g00483 206 Gene3D - 110 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00483 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 286.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00483 Bpe-Chr1:2998489 Bpe04g00547 Bpe-Chr4:3473672 7.48E-34 dispersed
Bpe01g00483 Bpe-Chr1:2998489 Bpe08g00441 Bpe-Chr8:2786870 2.45E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00318 BCT,CCT,ECH 4 130 CCAAT-HAP2 Transcription Factor Family AT5G12840 63.8 4.9e-42 168.3
Bpe01g00318 BCT,CCT,ECH 3 126 CCAAT-HAP2 Transcription Factor Family AT3G20910 67.2 7.8e-41 164.5
Bpe08g00276 BCT,CCT,ECH 105 259 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.1 1.5e-39 160.2
Bpe01g00483 . 62 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 73.9 6.1e-40 160.6
Bpe08g00441 . 58 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 68.7 2.6e-38 155.2
Bpe01g00483 . 8 174 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.7 1.9e-48 189.1
Bpe08g00441 . 9 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.1 9.2e-48 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20792 PF02045 CBFB_NFYA 3.30E-26 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00483 Bpe_Chr01 FPKM 21.893101 23.544178 37.720345 42.237492 38.705215 36.957279 39.805569 51.45977 52.660423 52.843731