Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00484 ATGAGTCTTGTCGTTCACAAAGATACATTGAACAAGCAGATGGATTCGAGCAAGTATGTGAGATATACACCTGAACAGGTTGAAGCTTTAGAGAGGGTTTACTCGGAGTGTCCAAAGCCTAGCTCTTTAAGGAGGCAACAACTCATTAGGGAGTGTCCTATTCTCTCTAATATTGAGCCTAAACAGATCAAAGTCTGGTTCCAGAACCGCAGATGCCGTGAGAAACAGAGAAAAGAATCTGCTCGCCTACAAACTGTGAACAGAAAACTAAATGCGATGAACAAGCTGTTAATGGAAGAGAATGACCGTCTGCAGAAACAAGTGTCTCAGCTGGTTTATGATAATGGGTATATGCGTCAGCAGCTGCATAGTGCGTCTGGAGCGACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAAACCCAACTTCTCAGCATCCTGAAAGGGATGCTACGAACCCAGCTGGTCTTCTTGCAATTGCTGAGGAGACCTTGGCAGAGTTTCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATTGTTGCTGTTTCTCGCAACTGCAGCGGAGTAGCAGCACGAGCTTGTGGTCTCGTTAGTCTCGAGCCCACCAAAATTGCTGAAATTTTGAAAGACCGACCTTCATGGTTTCGGGACTGCCGACGTGTTGATATATTAAGCGTAATACCTGCTGGAAATGGGGGGACAATAGAGCTCATATATATGCAGACATATGCTCCTACGACACTGGCTGCCGCACGGGATTTCTGGACTCTACGTTACACTACAAGTCTAGACGATGGAAGCCTTGTGGTATGTGAGAGATCGTTGACTGCCTCGGCTGGTGGTCCCGCGGGGCCTCCTACTTCGTGTTTTGCAAGAACTGAAATGCTTCCAAGTGGATGTTTAATTCGTGCTTGCGAGGGTGGAGGGTCCATTATTCACATTGTTGATCATATCGATTTCGATGCTCGGAAAGTTCCTGAAGTCCTGAGACCCCTGTATGAATCATCTAAGATTCTTGCTCAGAAAATGACAATTGCTGCTGTACGGCATGTTAGACAAATTGCTCAAGAGTCTAATGGAGAAATTCAAATTGGCAGTGGCCGCCAACCTGCTGTTTTAAGGACATTTAGTCAGAAATTGTGCCGGGGATTCAACGATGCTGTTAATGGATTTATTGATGATGGCTGGTCCCTCATGGGCAGCGATGGAGTGGAGGATGTGACGATTATGATAAACTCGTCGCCAAATAAAAATTTCAACTCCCAATTCGGTGGCATGTCCATGTGTCCAAGTTTTGGCGGCGGCGTGTTATGTGCCAAGGCGTCGATGCTGTTGCAGGATGTTCCCCCTGCTTTGCTTGTCCGATTCTTGAGGGAGCATCGATCTGAGTGGGCCGATTATGGGGTCGATGCCTACTCGGCTGCGTGTCTTAAATCCAGCCCTTACTCGATCCCCTGCCCCAGGCTTAGTAGCTTCCCTAGTGGCCAAGTTATTCTTCCTCTTGCTCATACTGTGGAACACGAAGAGTTCTTGGAGGTGGTTCGGCTTGAGGGCCATGCTTTTTCTCCTGATGTAGTTTTGGCTGGACGGGATATGTACTTATTGCAGCTATGTAGTGGGGTTGATGAGAGTGCCGGCGGCTCCTGTGCCCAGCTTGTTTTTGCACCGATTGATGAAACATTTGCAGATGATGCTCCCCTGCTGCCTTCTGGTTTTCGGGACGGGTCTGGCACGACCACTCGAACTTTGGATTTGGCTTCTACCCTTGAAGTTGGGCCCGGTGGTGCTCGACTGGGCAGTGAAGTTGATTGGAGCGGCTATAACCTTCGATCTGTATTAACAATCGCATTTCAATATACTTTTGAGGATCACACGAGAGAAAATGTGGCTGCGATGGCTCGTCAGTTTGTTCGGAGTGTGGTTGGCTCTGTGCAAAGAGTTGCTATGGCGATTGCCCCTTCGCGAATGAGCTCCCTCCAGGGCCCTAAACCCCTCGCTGCTTCTCCTGAAGCTGTTACTTTGGCCCGATGGATTTGCCGAAGTTACAAGATTCATGTAGGGGGAGATCTCCTTCAAGCAGAATCACAATCCGGCGATGTTATTTTGAGGCAACTGTGGCACCATTCTGATGCAATTATGTGCTGCTCGGTGGCGAAAACTAATGCATCTCCCATCTTCACCTTTGCCAACCAGGCAGGGCTCGACATGCTTGAAACTACCCTTGTTGCCCTCCAAGATATAATGCTCGACAAGATTCTCGACGACGGAGGTAGGAGAATTCTCTGCTCAGAATTCTCCAAGATTATGCAGCAGGGATTTGCTCATCTGCCTGCCAGAATTTGCACATCGAGCATGGGCAGACCCATAACTTACGAGCAGGCCGTCACTTGGAAAGTCCTTGACGACGACAACTCGAATCACTGCCTGGCGATAATGTTCATTAACTGGTCTTTTGTATGA 2526 48.5 MSLVVHKDTLNKQMDSSKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESARLQTVNRKLNAMNKLLMEENDRLQKQVSQLVYDNGYMRQQLHSASGATTDNSCESVVMSGQHQQQQNPTSQHPERDATNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRRVDILSVIPAGNGGTIELIYMQTYAPTTLAAARDFWTLRYTTSLDDGSLVVCERSLTASAGGPAGPPTSCFARTEMLPSGCLIRACEGGGSIIHIVDHIDFDARKVPEVLRPLYESSKILAQKMTIAAVRHVRQIAQESNGEIQIGSGRQPAVLRTFSQKLCRGFNDAVNGFIDDGWSLMGSDGVEDVTIMINSSPNKNFNSQFGGMSMCPSFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYSAACLKSSPYSIPCPRLSSFPSGQVILPLAHTVEHEEFLEVVRLEGHAFSPDVVLAGRDMYLLQLCSGVDESAGGSCAQLVFAPIDETFADDAPLLPSGFRDGSGTTTRTLDLASTLEVGPGGARLGSEVDWSGYNLRSVLTIAFQYTFEDHTRENVAAMARQFVRSVVGSVQRVAMAIAPSRMSSLQGPKPLAASPEAVTLARWICRSYKIHVGGDLLQAESQSGDVILRQLWHHSDAIMCCSVAKTNASPIFTFANQAGLDMLETTLVALQDIMLDKILDDGGRRILCSEFSKIMQQGFAHLPARICTSSMGRPITYEQAVTWKVLDDDNSNHCLAIMFINWSFV 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3005518 3010846 + Bpe000467.1 Bpe01g00484 97732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00484 841 CDD homeodomain 18 78 IPR001356 GO:0003677
Bpe01g00484 841 MobiDBLite consensus disorder prediction 123 158 - -
Bpe01g00484 841 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Bpe01g00484 841 Coils Coil 83 107 - -
Bpe01g00484 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 841 - -
Bpe01g00484 841 SMART START_1 166 376 IPR002913 GO:0008289
Bpe01g00484 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 841 IPR044830 GO:0003700
Bpe01g00484 841 CDD bZIP 70 109 - -
Bpe01g00484 841 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Bpe01g00484 841 Pfam MEKHLA domain 695 840 IPR013978 -
Bpe01g00484 841 SUPERFAMILY Bet v1-like 167 378 - -
Bpe01g00484 841 SMART HOX_1 15 81 IPR001356 GO:0003677
Bpe01g00484 841 MobiDBLite consensus disorder prediction 123 157 - -
Bpe01g00484 841 Gene3D - 11 84 - -
Bpe01g00484 841 SUPERFAMILY Bet v1-like 414 581 - -
Bpe01g00484 841 Gene3D - 200 382 IPR023393 -
Bpe01g00484 841 Pfam START domain 167 375 IPR002913 GO:0008289
Bpe01g00484 841 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Bpe01g00484 841 CDD START_ArGLABRA2_like 161 377 - -
Bpe01g00484 841 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00484 Bpe-Chr1:3005518 Bpe11g00813 Bpe-Chr11:6065519 0 dispersed
Bpe01g00484 Bpe-Chr1:3005518 Bpe08g00442 Bpe-Chr8:2791068 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20793 PF01852 START 1.10E-46 CL0209 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00484 K09338 - qsu:112031480 1429.08