Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00538 ATGGACCCGATACAGCCAAAGAGCTGGAGCATCCATACCCGGTTGGAGATCACCCAAAAGTACCAAATTCTCGAAAGGGTCGGATCCGGGGCTTTCTCCGACGTCTATCGTGGCCGCCGTCACTCCGATGGTCTCATCGTTGCCCTGAAAGAGATACACGATTACCAGTCTGCTTTCAGGGAAATCGAGGCCCTCCAAATCCTAAAGTCTTCTCCTCATGTCGTCCTTCTGCACGAATACTTTTGGCGCGAGGATGAAGACGCCGTCCTCGTCCTCGAGTTCCTGAGAACAGATTTGTCAGGCGTAATCAGCGAGGCTAAGAAGGGAGGCTCCGTCGGGATGGGAGAGGTGAAGAGGTGGATGCTCCAGATACTGGCCGGGGTTGACGATTGCCATCGGAATCTGATCGTCCATCGGGATTTGAAACCTAGCAATTTGTTGATCTCTGACGATGGAGTGCTCAAAATTGCTGATTTTGGACAGGCAAGAATACTCATGGAAACTGGAAATATCAACACCCACGAGACCCGACATCCATATGAGCAAGAGCAACACTCTCCTAACCCTGCATTCGCCATTCAAACATCCGAAGCATTAGCTGAATCAGATTCCACTTCTCAAGATAAATATCAAACCAACGAGCAGGAAATCATCAGCAAGGAAGAATATTTCAGAGCATTAGATGAGCTAAAGGGGAAAAACTCGAGGGATGATATCGATAAGGAAGCAAATATTCAGGATGGAAATACATCTTGCTTTGCGACATGCACAGCCAGTGACATAGAAGATGATCCTTTCAAGGGTTCTTATTCTTATGAGGTTGAAGGAGATGAATCAAATGGATTGCTTACTTCCTGTGTCGGAACCCGTTGGTTCAGAGCCCCTGAGCTGCTCTATGGATCCACAAACTACGGCCTGGAGATCGACTTGTGGTCATTGGGCTGCATTTTTGCAGAGCTTTTCACTCTTCAGCCTCTTTTTCCAGGAACAACCGATATCGATCAGCTAAGTCGAATACTCGGTGTTTTAGGAAATATAACTGAGGAAAACTGGCCTGGCTGTTTGAAACTTCCTGATTATACAATTATATCATTCAATAAAGTGGAAGATCCAATTGGTTTAGAAAGATGTATGCCCAACTGTTCTTCCGATGAAACATCGCTGGTGAGAAGACTTATTTGTTACGACCCAGCTCGTAGAACTTGTGCGGTAGAGTTACTTCATGACAAGTATTTTACCGACAAGCCTCTTCCGGTTCCGATGTCTGAGCTGAGAGTTCCCCTGGCCAGAAATATGCAAGATGATGATTCTTCTGGTGGGTTGCCAGATTATGATGAACCTTTTTCAGATTCCGATTTTGAGGACTTCGCCCCCATGAATGTCACCACCACCGGTACTGGTTTTTCCATACGCTTTCCTTGA 1422 46.41 MDPIQPKSWSIHTRLEITQKYQILERVGSGAFSDVYRGRRHSDGLIVALKEIHDYQSAFREIEALQILKSSPHVVLLHEYFWREDEDAVLVLEFLRTDLSGVISEAKKGGSVGMGEVKRWMLQILAGVDDCHRNLIVHRDLKPSNLLISDDGVLKIADFGQARILMETGNINTHETRHPYEQEQHSPNPAFAIQTSEALAESDSTSQDKYQTNEQEIISKEEYFRALDELKGKNSRDDIDKEANIQDGNTSCFATCTASDIEDDPFKGSYSYEVEGDESNGLLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLQPLFPGTTDIDQLSRILGVLGNITEENWPGCLKLPDYTIISFNKVEDPIGLERCMPNCSSDETSLVRRLICYDPARRTCAVELLHDKYFTDKPLPVPMSELRVPLARNMQDDDSSGGLPDYDEPFSDSDFEDFAPMNVTTTGTGFSIRFP 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3494349 3496136 - Bpe000519.1 Bpe01g00538 97786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00538 473 Pfam Protein kinase domain 279 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00538 473 Pfam Protein kinase domain 21 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00538 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Bpe01g00538 473 SMART serkin_6 21 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00538 473 PANTHER CELL DIVISION PROTEIN KINASE 16 421 - -
Bpe01g00538 473 SUPERFAMILY Protein kinase-like (PK-like) 9 434 IPR011009 -
Bpe01g00538 473 Gene3D Transferase(Phosphotransferase) domain 1 10 210 - -
Bpe01g00538 473 ProSiteProfiles Protein kinase domain profile. 21 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe01g00538 473 PANTHER CYCLIN-DEPENDENT KINASE 10 16 421 - -
Bpe01g00538 473 Gene3D Transferase(Phosphotransferase) domain 1 252 423 - -
Bpe01g00538 473 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00538 - - - zju:107431795 664.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00538 Bpe-Chr1:3494349 Bpe04g01919 Bpe-Chr4:24144143 1.69E-15 dispersed
Bpe01g00538 Bpe-Chr1:3494349 Bpe11g00362 Bpe-Chr11:2728497 2.24E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g315 . . . . Bpe01g00538 . . Bma11g00524 . . Cma05g01346 Cma12g01259 Car05g01260 Car12g01227 . . . . . . . . . . . . . . . . . . . . . . Csa02g00116 Chy05g01377 . . Blo14g00502 . . . . . . . Cmo05g01355 Cmo12g01289 . . . . . Cpe07g01019 Bhi06g02016 . . . . . . . . . . . . . . . . Cme05g01984
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01919 . 1 291 Core Cell Cycle Gene Families AT3G48750 86.3 2.4e-148 521.5
Bpe15g01030 . 1 237 Core Cell Cycle Gene Families AT3G48750 81.9 5.9e-118 420.6
Bpe07g00306 . 1 300 Core Cell Cycle Gene Families AT3G48750 58.3 6.3e-96 347.4
Bpe02g00294 . 11 307 Core Cell Cycle Gene Families AT3G48750 51.7 2.7e-91 332.0
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT3G54180 83.2 8.0e-150 526.6
Bpe02g00294 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.8 8.9e-117 416.8
Bpe04g01919 . 1 284 Core Cell Cycle Gene Families AT3G54180 54.8 3.5e-89 325.1
Bpe15g01030 . 15 233 Core Cell Cycle Gene Families AT3G54180 56.1 1.9e-71 266.2
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT2G38620 68.9 1.3e-118 422.5
Bpe02g00294 . 11 310 Core Cell Cycle Gene Families AT2G38620 57.3 7.2e-93 337.0
Bpe15g01030 . 47 233 Core Cell Cycle Gene Families AT2G38620 57.2 2.3e-67 252.3
Bpe02g00294 . 1 307 Core Cell Cycle Gene Families AT1G76540 83.1 1.2e-153 539.3
Bpe07g00306 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 2.4e-117 418.7
Bpe04g01919 . 1 286 Core Cell Cycle Gene Families AT1G76540 52.7 8.5e-91 330.5
Bpe15g01030 . 5 233 Core Cell Cycle Gene Families AT1G76540 51.7 1.2e-71 266.9
Bpe02g00294 . 1 312 Core Cell Cycle Gene Families AT1G20930 81.9 1.1e-154 542.7
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT1G20930 66.3 8.8e-120 426.8
Bpe04g01919 . 1 286 Core Cell Cycle Gene Families AT1G20930 54.1 1.1e-93 340.1
Bpe15g01030 . 5 233 Core Cell Cycle Gene Families AT1G20930 53.4 1.1e-74 276.9
Bpe08g01024 CCT,ECH 123 439 Core Cell Cycle Gene Families AT5G10270 55.6 1.6e-99 360.1
Bpe11g00484 CCT,ECH 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 2.3e-98 356.3
Bpe02g00272 . 150 468 Core Cell Cycle Gene Families AT5G10270 53.0 2.3e-98 356.3
Bpe13g00648 CCT 99 415 Core Cell Cycle Gene Families AT5G10270 53.2 4.4e-97 352.1
Bpe05g00263 . 115 430 Core Cell Cycle Gene Families AT5G10270 52.9 3.7e-96 349.0
Bpe13g00189 . 92 418 Core Cell Cycle Gene Families AT5G10270 51.4 4.9e-96 348.6
Bpe14g01150 CCT 99 415 Core Cell Cycle Gene Families AT5G10270 53.5 6.3e-96 348.2
Bpe14g00649 . 141 457 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-95 347.4
Bpe15g00594 CCT 116 432 Core Cell Cycle Gene Families AT5G10270 53.2 4.1e-95 345.5
Bpe13g00301 . 116 433 Core Cell Cycle Gene Families AT5G10270 52.4 3.8e-93 339.0
Bpe08g01024 CCT,ECH 177 439 Core Cell Cycle Gene Families AT5G64960 55.4 2.5e-83 306.2
Bpe11g00484 CCT,ECH 177 439 Core Cell Cycle Gene Families AT5G64960 55.0 1.6e-82 303.5
Bpe02g00272 . 204 468 Core Cell Cycle Gene Families AT5G64960 53.2 2.1e-82 303.1
Bpe14g00649 . 195 457 Core Cell Cycle Gene Families AT5G64960 53.6 5.3e-81 298.5
Bpe13g00648 CCT 153 415 Core Cell Cycle Gene Families AT5G64960 52.5 1.7e-79 293.5
Bpe13g00189 . 146 408 Core Cell Cycle Gene Families AT5G64960 51.8 2.9e-79 292.7
Bpe15g00594 CCT 170 434 Core Cell Cycle Gene Families AT5G64960 52.1 6.4e-79 291.6
Bpe05g00263 . 166 430 Core Cell Cycle Gene Families AT5G64960 51.8 1.4e-78 290.4
Bpe14g01150 CCT 153 415 Core Cell Cycle Gene Families AT5G64960 52.2 9.3e-78 287.7
Bpe13g00301 . 170 435 Core Cell Cycle Gene Families AT5G64960 51.2 4.6e-77 285.4
Bpe10g00280 . 212 617 Core Cell Cycle Gene Families AT5G63610 73.3 8.6e-164 573.5
Bpe01g00538 . 1 473 Core Cell Cycle Gene Families AT4G28980 58.7 7.0e-161 563.9
Bpe14g00392 . 4 474 Core Cell Cycle Gene Families AT1G44110 60.5 2.4e-142 502.3
Bpe02g01650 BCT,CCT 4 478 Core Cell Cycle Gene Families AT1G44110 54.9 7.7e-133 470.7
Bpe04g00043 CCT 214 480 Core Cell Cycle Gene Families AT1G44110 55.8 1.9e-86 316.6
Bpe02g00582 CCT 205 467 Core Cell Cycle Gene Families AT1G44110 54.4 2.1e-82 303.1
Bpe14g00391 BCT,CCT 212 494 Core Cell Cycle Gene Families AT1G77390 58.3 8.3e-92 334.3
Bpe04g00043 CCT 214 480 Core Cell Cycle Gene Families AT1G77390 51.7 1.1e-75 280.8
Bpe02g00582 CCT 205 467 Core Cell Cycle Gene Families AT1G77390 52.5 5.4e-75 278.5
Bpe04g00165 BCT,CCT,ECH 91 229 Core Cell Cycle Gene Families AT1G77390 51.8 2.6e-37 153.3
Bpe04g00043 CCT 1 492 Core Cell Cycle Gene Families AT5G25380 53.2 5.0e-121 431.4
Bpe02g00582 CCT 9 467 Core Cell Cycle Gene Families AT5G25380 52.4 8.0e-111 397.5
Bpe14g00392 . 206 465 Core Cell Cycle Gene Families AT5G25380 52.0 9.2e-75 277.7
Bpe02g01650 BCT,CCT 213 468 Core Cell Cycle Gene Families AT5G25380 50.5 8.1e-71 264.6
Bpe14g00391 BCT,CCT 212 429 Core Cell Cycle Gene Families AT5G11300 55.0 1.8e-64 243.4
Bpe14g00392 . 208 413 Core Cell Cycle Gene Families AT5G11300 55.3 3.8e-62 235.7
Bpe02g01650 BCT,CCT 215 416 Core Cell Cycle Gene Families AT5G11300 54.3 9.2e-61 231.1
Bpe02g00444 BCT,CCT,ECH 86 289 Core Cell Cycle Gene Families AT5G11300 54.0 5.1e-59 225.3
Bpe05g00036 CCT,ECH 85 301 Core Cell Cycle Gene Families AT5G11300 52.1 9.9e-55 211.1
Bpe04g00165 BCT,CCT,ECH 93 226 Core Cell Cycle Gene Families AT5G11300 57.5 6.4e-38 155.2
Bpe06g00715 . 170 501 Core Cell Cycle Gene Families AT1G15570 61.8 1.5e-112 403.3
Bpe02g00582 CCT 206 467 Core Cell Cycle Gene Families AT1G15570 62.2 4.5e-93 338.6
Bpe02g00444 BCT,CCT,ECH 86 344 Core Cell Cycle Gene Families AT1G15570 53.3 1.2e-74 277.3
Bpe14g00392 . 206 472 Core Cell Cycle Gene Families AT1G15570 51.8 2.1e-74 276.6
Bpe02g01650 BCT,CCT 213 475 Core Cell Cycle Gene Families AT1G15570 50.4 1.8e-73 273.5
Bpe14g00392 . 206 472 Core Cell Cycle Gene Families AT1G80370 52.1 9.6e-75 277.7
Bpe02g01650 BCT,CCT 213 476 Core Cell Cycle Gene Families AT1G80370 50.9 9.0e-73 271.2
Bpe02g00444 BCT,CCT,ECH 86 352 Core Cell Cycle Gene Families AT1G80370 52.2 1.2e-72 270.8
Bpe04g00165 BCT,CCT,ECH 93 229 Core Cell Cycle Gene Families AT1G80370 56.3 2.7e-37 153.3
Bpe02g00444 BCT,CCT,ECH 3 356 Core Cell Cycle Gene Families AT5G43080 58.4 2.2e-111 399.1
Bpe05g00036 CCT,ECH 5 366 Core Cell Cycle Gene Families AT5G43080 54.5 2.4e-102 369.0
Bpe04g00043 CCT 216 480 Core Cell Cycle Gene Families AT5G43080 53.6 1.1e-78 290.4
Bpe02g01650 BCT,CCT 216 478 Core Cell Cycle Gene Families AT5G43080 50.2 1.1e-75 280.4
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT5G43080 52.1 2.1e-74 276.2
Bpe02g00444 BCT,CCT,ECH 6 355 Core Cell Cycle Gene Families AT1G47210 56.7 6.1e-112 401.0
Bpe05g00036 CCT,ECH 1 366 Core Cell Cycle Gene Families AT1G47210 53.1 2.8e-101 365.5
Bpe04g00043 CCT 216 492 Core Cell Cycle Gene Families AT1G47210 51.6 3.4e-78 288.9
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT1G47210 51.3 4.3e-73 271.9
Bpe02g00444 BCT,CCT,ECH 86 355 Core Cell Cycle Gene Families AT1G47220 58.7 1.1e-88 323.6
Bpe05g00036 CCT,ECH 79 366 Core Cell Cycle Gene Families AT1G47220 56.3 1.5e-82 303.1
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT1G47220 50.6 2.8e-68 255.8
Bpe02g00444 BCT,CCT,ECH 3 359 Core Cell Cycle Gene Families AT1G47230 55.8 5.3e-108 387.9
Bpe05g00036 CCT,ECH 1 366 Core Cell Cycle Gene Families AT1G47230 55.6 7.2e-105 377.5
Bpe02g00582 CCT 208 467 Core Cell Cycle Gene Families AT1G47230 51.3 1.8e-71 266.5
Bpe02g00023 BCT,CCT 28 450 Core Cell Cycle Gene Families AT4G37490 52.5 5.2e-107 384.8
Bpe04g00534 BCT 1 249 Core Cell Cycle Gene Families AT4G37490 60.2 1.1e-77 287.3
Bpe02g00023 BCT,CCT 13 341 Core Cell Cycle Gene Families AT5G06150 51.5 3.5e-74 275.4
Bpe01g00337 . 674 862 Core Cell Cycle Gene Families AT5G06150 63.0 3.5e-58 222.2
Bpe04g00534 BCT 1 140 Core Cell Cycle Gene Families AT5G06150 65.7 1.3e-44 177.2
Bpe02g00023 BCT,CCT 32 401 Core Cell Cycle Gene Families AT3G11520 53.1 3.1e-95 345.5
Bpe04g00534 BCT 1 207 Core Cell Cycle Gene Families AT3G11520 64.7 4.1e-71 265.4
Bpe02g00310 . 63 287 Core Cell Cycle Gene Families AT3G11520 52.2 3.9e-61 232.3
Bpe01g00337 . 584 977 Core Cell Cycle Gene Families AT2G26760 50.4 9.2e-95 344.0
Bpe04g00534 BCT 1 243 Core Cell Cycle Gene Families AT2G26760 58.8 3.5e-78 288.9
Bpe02g00310 . 18 332 Core Cell Cycle Gene Families AT2G17620 60.7 1.6e-103 373.2
Bpe02g00310 . 9 287 Core Cell Cycle Gene Families AT4G35620 59.3 4.2e-84 308.5
Bpe01g00337 . 696 923 Core Cell Cycle Gene Families AT4G35620 50.7 8.6e-53 204.5
Bpe02g00310 . 13 330 Core Cell Cycle Gene Families AT1G20610 69.6 8.8e-123 437.2
Bpe02g00310 . 13 227 Core Cell Cycle Gene Families AT1G76310 69.4 4.7e-79 291.6
Bpe02g00023 BCT,CCT 176 336 Core Cell Cycle Gene Families AT1G76310 52.1 4.3e-40 162.2
Bpe01g00337 . 697 862 Core Cell Cycle Gene Families AT1G76310 50.6 9.7e-40 161.0
Bpe15g00922 CCT 416 719 Core Cell Cycle Gene Families AT1G16330 67.1 1.0e-114 411.0
Bpe10g00825 . 13 339 Core Cell Cycle Gene Families AT1G70210 58.4 1.2e-98 356.7
Bpe11g01736 . 1 328 Core Cell Cycle Gene Families AT1G70210 57.9 1.9e-96 349.4
Bpe13g00484 . 10 341 Core Cell Cycle Gene Families AT1G70210 56.5 1.1e-86 317.0
Bpe13g01449 . 12 286 Core Cell Cycle Gene Families AT1G70210 61.3 1.2e-85 313.5
Bpe15g00126 . 6 323 Core Cell Cycle Gene Families AT4G34160 50.2 7.3e-81 297.7
Bpe15g00257 . 6 226 Core Cell Cycle Gene Families AT5G65420 59.6 1.9e-70 262.7
Bpe06g00097 . 62 276 Core Cell Cycle Gene Families AT5G65420 56.4 3.8e-63 238.4
Bpe14g00477 CCT 62 266 Core Cell Cycle Gene Families AT5G65420 53.1 2.0e-56 216.1
Bpe15g00257 . 1 195 Core Cell Cycle Gene Families AT5G10440 56.3 5.5e-60 227.6
Bpe06g00097 . 62 241 Core Cell Cycle Gene Families AT5G10440 54.1 1.1e-52 203.4
Bpe14g00477 CCT 59 211 Core Cell Cycle Gene Families AT5G10440 56.2 5.0e-45 177.9
Bpe08g00184 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 4.1e-43 170.2
Bpe08g01297 CCT 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 2.0e-42 167.9
Bpe08g00184 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.1e-40 162.2
Bpe08g01297 CCT 1 85 Core Cell Cycle Gene Families AT2G27970 89.4 3.1e-40 160.6
Bpe04g01955 . 24 1024 Core Cell Cycle Gene Families AT3G12280 70.4 0.0e+00 1336.6
Bpe06g00511 . 2 492 Core Cell Cycle Gene Families AT1G02970 57.0 1.9e-153 539.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007745 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63119 PF00069 Pkinase 4.20E-33 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe01g00538 Bpe_Chr01 FPKM 2.688349 3.351066 5.302942 4.803354 7.855299 7.412827 8.300991 4.563424 4.144946 4.632471