Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00552 ATGAAGAAGATTCACCATCTCAGCTTGCTATCAGCAATGGCAGACCAGCCAGTCTCTGAGTCTGAGTCAAGCTGCACAAACCCTGCTTCATCTTCCTCGCCTTCGCCATCCTCGCCGCCGGAAGAATTGACGTGTCAGTTGCCGCGGAAACGGCAGAAACGATCAGCTTCTGATACCGACAGCAAACATCCCGTTTTCCGTGGAGTCCGAAAGCGTGCTTGGGGAAAATGGGTGTCTGAAATCCGAGAACCCAGAAAGAAAAGTCGGATCTGGCTCGGTACTTTTGCCACGCCGGAAATGGCTGCTCGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGAAAGTCCGCCATACTCAACTTCCCAGAACACGCTGGAGCTCTTCCCCGCCCGGCTTCCAACTCTCCTAGAGATATTCAAGTCGCCGCTGCTAAAGCCGCTTCAATGGATTTTCCCGTTCTTTCACCGCCATCCTCATCGACGCCGCAGATCTCCCAGTCTTCTTCTTCCTCTTCCTCCTCATCCTCGTTTTCATTGTCATCTTTAGAAGAATCCACGCCGGAGGAGCTCAGTGAGATAGTACAGCTACCGAACCTCGGAACGAGCTACGACTCGCCCGACTCCGGCAGCGAGTTGGTGTTCGCAGACTCAATGGAAGGTTGGCTTTATCCTTACCCATGGTATCAAAGCATAAATGGAGATGAAGTCTTCTGTTTATCAATGGCGGAAAATCCTACAGTTTTCGAAGCTTCCTTGTGGCAACATTAA 768 51.56 MKKIHHLSLLSAMADQPVSESESSCTNPASSSSPSPSSPPEELTCQLPRKRQKRSASDTDSKHPVFRGVRKRAWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGKSAILNFPEHAGALPRPASNSPRDIQVAAAKAASMDFPVLSPPSSSTPQISQSSSSSSSSSSFSLSSLEESTPEELSEIVQLPNLGTSYDSPDSGSELVFADSMEGWLYPYPWYQSINGDEVFCLSMAENPTVFEASLWQH 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3582125 3582892 + Bpe000533.1 Bpe01g00552 97800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00552 255 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Bpe01g00552 255 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Bpe01g00552 255 MobiDBLite consensus disorder prediction 1 67 - -
Bpe01g00552 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 235 - -
Bpe01g00552 255 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Bpe01g00552 255 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Bpe01g00552 255 MobiDBLite consensus disorder prediction 152 191 - -
Bpe01g00552 255 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Bpe01g00552 255 MobiDBLite consensus disorder prediction 46 67 - -
Bpe01g00552 255 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Bpe01g00552 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 235 - -
Bpe01g00552 255 MobiDBLite consensus disorder prediction 14 42 - -
Bpe01g00552 255 MobiDBLite consensus disorder prediction 153 191 - -
Bpe01g00552 255 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Bpe01g00552 255 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00552 Bpe-Chr1:3582125 Bpe02g02242 Bpe-Chr2:23393593 2.46E-65 dispersed
Bpe04g00311 Bpe-Chr4:1991813 Bpe01g00552 Bpe-Chr1:3582125 5.94E-35 dispersed
Bpe12g00412 Bpe-Chr12:9705559 Bpe01g00552 Bpe-Chr1:3582125 9.84E-34 dispersed
Bpe05g01037 Bpe-Chr5:22946413 Bpe01g00552 Bpe-Chr1:3582125 1.34E-37 transposed
Bpe01g00552 Bpe-Chr1:3582125 Bpe13g01287 Bpe-Chr13:18029116 2.81E-63 wgd
Bpe01g00552 Bpe-Chr1:3582125 Bpe02g02241 Bpe-Chr2:23387605 2.81E-65 wgd
Bpe01g00552 Bpe-Chr1:3582125 Bpe08g00494 Bpe-Chr8:3241344 2.25E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20798 PF00847 AP2 4.50E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00552 K09286 - pvy:116108531 232.261