Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00577 ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGCCTGACGGTCCTGTGGATTCTTTCTCCTCCGACCATTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACCCAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAAAGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGGTTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGAGTCGCCGGCAATCGAAGCTTCGTTTGTGAGTTCGTTTCCTTTTTTGGCCTCGCCGATCTCTGTTTCTCCTCTGGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGGGGGGTCTCCTGTTTGCGGATCTCCGACCCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGACGCCTCGACTCCTGGGAAGAACATTTGGAAGAGGAGCCAGTGATGGAGCGGGTCGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCACTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA 906 52.21 MEKEPGADFDVELPDGPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRKGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDESPAIEASFVSSFPFLASPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQGGSPVCGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHLEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSLDPELYRVTKSIIS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3758965 3759870 + Bpe000557.1 Bpe01g00577 97825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00577 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 12 296 - -
Bpe01g00577 301 SMART c3hfinal6 65 91 IPR000571 GO:0046872
Bpe01g00577 301 SMART c3hfinal6 100 123 IPR000571 GO:0046872
Bpe01g00577 301 PANTHER UNKEMPT FAMILY MEMBER 12 296 IPR045234 -
Bpe01g00577 301 SUPERFAMILY CCCH zinc finger 64 93 IPR036855 GO:0046872
Bpe01g00577 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 90 IPR000571 GO:0046872
Bpe01g00577 301 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Bpe01g00577 301 Gene3D - 67 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00577 Bpe13g01268 CCT
Bpe01g00577 Bpe13g01268 ECH
Bpe01g00577 Bpe02g02219 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00577 Bpe-Chr1:3758965 Bpe02g01775 Bpe-Chr2:20086533 1.17E-88 dispersed
Bpe01g00577 Bpe-Chr1:3758965 Bpe13g01268 Bpe-Chr13:17880145 4.13E-124 wgd
Bpe01g00577 Bpe-Chr1:3758965 Bpe02g02219 Bpe-Chr2:23235449 1.99E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20800 PF00642 zf-CCCH 1.00E-06 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00577 - - jre:109010264 392.504