Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe01g00577 | ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGCCTGACGGTCCTGTGGATTCTTTCTCCTCCGACCATTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACCCAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAAAGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGGTTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGAGTCGCCGGCAATCGAAGCTTCGTTTGTGAGTTCGTTTCCTTTTTTGGCCTCGCCGATCTCTGTTTCTCCTCTGGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGGGGGGTCTCCTGTTTGCGGATCTCCGACCCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGACGCCTCGACTCCTGGGAAGAACATTTGGAAGAGGAGCCAGTGATGGAGCGGGTCGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCACTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA | 906 | 52.21 | MEKEPGADFDVELPDGPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRKGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDESPAIEASFVSSFPFLASPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQGGSPVCGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHLEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSLDPELYRVTKSIIS | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3758965 | 3759870 | + | Bpe000557.1 | Bpe01g00577 | 97825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe01g00577 | 301 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 12 | 296 | - | - | |
Bpe01g00577 | 301 | SMART | c3hfinal6 | 65 | 91 | IPR000571 | GO:0046872 | |
Bpe01g00577 | 301 | SMART | c3hfinal6 | 100 | 123 | IPR000571 | GO:0046872 | |
Bpe01g00577 | 301 | PANTHER | UNKEMPT FAMILY MEMBER | 12 | 296 | IPR045234 | - | |
Bpe01g00577 | 301 | SUPERFAMILY | CCCH zinc finger | 64 | 93 | IPR036855 | GO:0046872 | |
Bpe01g00577 | 301 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 70 | 90 | IPR000571 | GO:0046872 | |
Bpe01g00577 | 301 | ProSiteProfiles | Zinc finger C3H1-type profile. | 66 | 92 | IPR000571 | GO:0046872 | |
Bpe01g00577 | 301 | Gene3D | - | 67 | 129 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe01g00577 | Bpe13g01268 | CCT | |
Bpe01g00577 | Bpe13g01268 | ECH | |
Bpe01g00577 | Bpe02g02219 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe01g00577 | Bpe-Chr1:3758965 | Bpe02g01775 | Bpe-Chr2:20086533 | 1.17E-88 | dispersed | |
Bpe01g00577 | Bpe-Chr1:3758965 | Bpe13g01268 | Bpe-Chr13:17880145 | 4.13E-124 | wgd | |
Bpe01g00577 | Bpe-Chr1:3758965 | Bpe02g02219 | Bpe-Chr2:23235449 | 1.99E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20800 | PF00642 | zf-CCCH | 1.00E-06 | CL0537 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe01g00577 | - | - | jre:109010264 | 392.504 |