Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00625 ATGCAGCACCAGCGACTTAAGCAACAGGCAATCATGCAACACTCTCTATACCATCATCCCGCTCTCTTGGCTGCCCCTCAGATAGAGCCTATCTTGAGTGGAAACCTGCCTCCTGGCTTTGATTCAGCCACTTGCCGCAGTGTGTTTGGCCAACCGGTTAAAGTTAATTGGGCGTATGCAAGTAGTCAGAGGGAAGACACTTCAGGGCACTATAATATCTTTGTGGGTGATCTTAGCCCTGAGGTTACTGATGCTACATTATTTGCGTGCTTTTCTGTTTATTCTTCTTGTTCCGACGCAAGGGTTATGTGGGATCAAAAAACTGGGCGGTCGAGGGGTTATGGGTTTGTTTCTTTTCGAGATCAACAGGAAGCTCAAACCGCAATAAATGATGTGAATGGGAAGTGGCTTGGTAGTAGACAGATTAGGTGTAATTGGGCAACCAAAGGTGCTGTATCTGGTGATGACAAGCAGAGTTCAGATGCCAAAAGTGTTGTTGAGCCGGCAAATGGAACTTCAGACGATGGTCTGGAGAAGACTAATGAAGACGCACCAGAGAACAACCCTCAGTATACCACTGTTTATGTCGGCAATCTCTCTCCAGAAGTAAGAGCCTCCTCTTTCAAAACCGTATTATTTGTTTTATTAGATTACACTTCGGTTAAGCCTTTGGGTGATAGAGTACTAGTTAAGACAAAAAACGCAGAAGAAAAGACTCAGGGAGGTATTCTGCTTCCAACTGCAGCTCAGACTAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGTGAAGGCAAAACCATTGGAAAGACCAAAGTGGATATTTGTGTTAAGATTGGTGCTCAAGTTGTTTATTCCAAATATGCGGGGACAGAGTTGGAGTTCGATGGCTCGAAGCATCTTATCTTGAAGGAGGACGACGTTGTTGGTATACTAGAAACAGATGATGTGAAGGATCTAAAGCCCTTGAATGACAGAGTTCTGATCAAGGTTGCCGAAGCTGAGGAGAAAACGGCTGGAGGATTGTTGCTGACAGAAGCAACCAAGGAGAAGCCTTCCATTGGCACGGTGGTGGCTGTTGGGCCTGGATCACTGGATGAGGAAGGCAACAGGAAGGCATTATCTGTAGCCACCGGCAGCACCGTGATGTACTCCAAGTATGCCGGCAATGACTTCAAGGGCAAGGACGGTTCGGAATATATAGTTTTACGAGTTTCAGATGTCATGGCAGTGCTTTCTTAG 1239 46.25 MQHQRLKQQAIMQHSLYHHPALLAAPQIEPILSGNLPPGFDSATCRSVFGQPVKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYSSCSDARVMWDQKTGRSRGYGFVSFRDQQEAQTAINDVNGKWLGSRQIRCNWATKGAVSGDDKQSSDAKSVVEPANGTSDDGLEKTNEDAPENNPQYTTVYVGNLSPEVRASSFKTVLFVLLDYTSVKPLGDRVLVKTKNAEEKTQGGILLPTAAQTKPQGGEVVAVGEGKTIGKTKVDICVKIGAQVVYSKYAGTELEFDGSKHLILKEDDVVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVVAVGPGSLDEEGNRKALSVATGSTVMYSKYAGNDFKGKDGSEYIVLRVSDVMAVLS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4120839 4127854 + Bpe000602.1 Bpe01g00625 97873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00625 412 PANTHER GROES CHAPERONIN 208 412 - -
Bpe01g00625 412 Pfam Chaperonin 10 Kd subunit 221 310 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 Pfam Chaperonin 10 Kd subunit 319 410 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Bpe01g00625 412 SUPERFAMILY GroES-like 318 411 IPR011032 -
Bpe01g00625 412 CDD cpn10 319 411 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 SMART Cpn10_2 220 311 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 SMART Cpn10_2 318 411 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 Hamap Co-chaperonin GroES [groES]. 220 312 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 MobiDBLite consensus disorder prediction 151 189 - -
Bpe01g00625 412 PANTHER 10 KDA HEAT SHOCK PROTEIN 208 412 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 SMART rrm1_1 72 145 IPR000504 GO:0003723
Bpe01g00625 412 PRINTS 10kDa chaperonin signature 243 264 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 PRINTS 10kDa chaperonin signature 298 311 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 PRINTS 10kDa chaperonin signature 221 236 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 PRINTS 10kDa chaperonin signature 277 289 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 SUPERFAMILY GroES-like 219 312 IPR011032 -
Bpe01g00625 412 ProSitePatterns Chaperonins cpn10 signature. 221 245 IPR018369 GO:0005524|GO:0006457
Bpe01g00625 412 Hamap Co-chaperonin GroES [groES]. 318 412 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 143 IPR000504 GO:0003723
Bpe01g00625 412 MobiDBLite consensus disorder prediction 152 167 - -
Bpe01g00625 412 CDD cpn10 220 311 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bpe01g00625 412 Gene3D GroES chaperonin 216 313 IPR037124 GO:0006457
Bpe01g00625 412 Gene3D GroES chaperonin 314 412 IPR037124 GO:0006457
Bpe01g00625 412 SUPERFAMILY RNA-binding domain, RBD 61 152 IPR035979 GO:0003676
Bpe01g00625 412 ProSitePatterns Chaperonins cpn10 signature. 319 343 IPR018369 GO:0005524|GO:0006457
Bpe01g00625 412 CDD RRM2_PUB1 72 146 - -
Bpe01g00625 412 Gene3D - 2 164 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00118 Bpe-Chr1:686496 Bpe01g00625 Bpe-Chr1:4120839 6.52E-11 dispersed
Bpe01g00625 Bpe-Chr1:4120839 Bpe06g00809 Bpe-Chr6:18256274 3.04E-06 dispersed
Bpe13g01033 Bpe-Chr13:16021596 Bpe01g00625 Bpe-Chr1:4120839 1.37E-06 dispersed
Bpe01g00625 Bpe-Chr1:4120839 Bpe10g00710 Bpe-Chr10:13501555 4.18E-24 wgd
Bpe01g00625 Bpe-Chr1:4120839 Bpe04g00092 Bpe-Chr4:670395 3.39E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00625 K04078 - mnt:21387593 342.813