Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00636 ATGATTGTGGAAAATCAAAGTAGTTTGGCGGGGGATAATGGCGCCGCCGACATATTTCCGGTGGGTATGCGTGTTCTCGCTGTCGACGATGACCCTATTTGCCTCAAAATTTCGGAGAATCTACTTCGTAGATGCAAATATCACGTTACCACTACAAATCAGGCGATCCAGGCTCTGAAATTGTTGAGGGAAAATAGAAATATGTTTGATCTTGTTGTCAGCGCTGTAAATATGCCAGACATGGATGGATTCAAGCTGCTTGAACTCGTGGGGCTTGAAATGGACTTACCAGTTATCATGTTGTCAGCTCATAGCGATACGGAGCTTGTAATGAAGGGAGTTACTCATGGGGCTTGTGATACTTTGTTAAAACCGGTTCGAATCGAGGAGCTTAAGAACATATGGCAACATGTGATTAGAAGAAGGAAGTTTGATTCTAAAGGACAAAACAATTCCTCCAATCAAAACAGTCGGCGACATGGAAACAGCGAAAGCGAACAAGCTTTCTCTTCAACTGACAATGGAGGAAACATGAAATTAAATAGAAAGCGGAAGGATCAAAAGGAAGACGAGGAAGAGGAGGGGGAAGAGAAGGAACATGAAAATGAAGACCCTTCGACTCAGAAGAAGCCTCGAGTGGTTTGGTCGGGCGAGTTGCACCAGAAATTCGTTGCAGCTGTTCATCAACTCAGCATTGAGAAGGCTGTTCCTAAGAAGATATTGGATCTTATGAATGTTGAAGGACTCACGAGAGAAAATATAGCCAGCCATTTGCAGATATACAGACTGCAAAGAATCAGCGGTGTGGCATCTCAGCAGGGTAATATTGTTGCTGCTATGGGCGTTAAAGACGCCTCTTGCATGCGAGTTGGTAAGTTAGATGGATTTGGAGATTTATGCTCCTTAGCCGGAAATGGAAGCTTTTCAAGCGCACCATTATCATCATATCCACCTGGTGGAATGATTGGAAGATTGAACGCACCGGCTGGAATGACCCTTCATGGAATTACTTCTCGCCTCATCCAACAAAGCAATTCCCAGAATTTAAATAATCATGTCAATACCCTTGGTAAGATCGAGCCGGGAATGTTGTCTTCAGATAAAACTCATAGTATATTTCAAGGTATTCCAATGCCGTTACAGCTCGGCCAGTTGCAGCCTGGAAAATACAGTAGTGTGATGAAAGAGTTTAACCCCATTAATGATGAATCGGGTTTTACCCTGTTGGACGATTCAATTTCTGCTTCGCCTTTGATTATGCAAGGAAATATGGCACAAATACAAAATCGTGTAGGATTTGGGGCTGAATTTTCTGCAAAAGTGGCTTCGTTAAATCAAGAATCTTTGGTCGGTGGTATCGATGGTTCTTCTCATAACATAGATCACAATCTTTGTGACGAAAGATGGAATGGTGCATTTCAAATGTCCAAATTTCCATCAAATCCCTTTGAAAATTACCCACATGACCGATTGACTTCAAAGAACATGTGCAGAGCTCCTGTTGATTTCTCTTCCACCTGTGCGGTTTCGGATCCTATGCACGATCCAATTGATGAAAGACCAAGTGTTCCACCAAAGCAAAGGGTGGAAGAAAATAACCATGGTTTCCATTTGAATCATACTTTCTGGGCTCTAGATTGTACAGGCTCTGGTTTCTTAGGGTCGAGTGCTGAGCAGAACAGTACAGCTGGTCGTAAAATGTTTGATGTTTCTTCGAATAGTCATTTAACAGCCAGTGGAACTGCATTATATGCTCAGCAGGGGAACAATCTCTTACATCAAGCGAGTTATTCAAAGCAATTACCAATCATTTGA 1815 42.48 MIVENQSSLAGDNGAADIFPVGMRVLAVDDDPICLKISENLLRRCKYHVTTTNQAIQALKLLRENRNMFDLVVSAVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGVTHGACDTLLKPVRIEELKNIWQHVIRRRKFDSKGQNNSSNQNSRRHGNSESEQAFSSTDNGGNMKLNRKRKDQKEDEEEEGEEKEHENEDPSTQKKPRVVWSGELHQKFVAAVHQLSIEKAVPKKILDLMNVEGLTRENIASHLQIYRLQRISGVASQQGNIVAAMGVKDASCMRVGKLDGFGDLCSLAGNGSFSSAPLSSYPPGGMIGRLNAPAGMTLHGITSRLIQQSNSQNLNNHVNTLGKIEPGMLSSDKTHSIFQGIPMPLQLGQLQPGKYSSVMKEFNPINDESGFTLLDDSISASPLIMQGNMAQIQNRVGFGAEFSAKVASLNQESLVGGIDGSSHNIDHNLCDERWNGAFQMSKFPSNPFENYPHDRLTSKNMCRAPVDFSSTCAVSDPMHDPIDERPSVPPKQRVEENNHGFHLNHTFWALDCTGSGFLGSSAEQNSTAGRKMFDVSSNSHLTASGTALYAQQGNNLLHQASYSKQLPII 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4288469 4291249 + Bpe000612.1 Bpe01g00636 97884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00636 604 ProSiteProfiles Response regulatory domain profile. 24 139 IPR001789 GO:0000160
Bpe01g00636 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 516 IPR045279 GO:0009736
Bpe01g00636 604 MobiDBLite consensus disorder prediction 145 211 - -
Bpe01g00636 604 Coils Coil 177 201 - -
Bpe01g00636 604 Gene3D - 206 266 - -
Bpe01g00636 604 MobiDBLite consensus disorder prediction 148 177 - -
Bpe01g00636 604 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Bpe01g00636 604 SMART REC_2 23 135 IPR001789 GO:0000160
Bpe01g00636 604 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 264 IPR006447 GO:0003677
Bpe01g00636 604 SUPERFAMILY CheY-like 22 146 IPR011006 -
Bpe01g00636 604 CDD REC_typeB_ARR-like 25 139 - -
Bpe01g00636 604 Pfam Response regulator receiver domain 25 133 IPR001789 GO:0000160
Bpe01g00636 604 Gene3D - 22 161 - -
Bpe01g00636 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 516 - -
Bpe01g00636 604 SUPERFAMILY Homeodomain-like 207 264 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00636 Bpe13g01134 CCT
Bpe01g00636 Bpe08g00654 CCT
Bpe01g00636 Bpe08g00654 ECH
Bpe01g00636 Bpe13g01134 ECH
Bpe01g00636 Bpe02g02148 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00636 Bpe-Chr1:4288469 Bpe13g01134 Bpe-Chr13:16879739 2.15E-121 dispersed
Bpe01g00636 Bpe-Chr1:4288469 Bpe02g02148 Bpe-Chr2:22793869 3.93E-126 wgd
Bpe01g00636 Bpe-Chr1:4288469 Bpe08g00654 Bpe-Chr8:6676192 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20806 PF00072 Response_reg 1.40E-21 CL0304 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00636 K14491 - jre:109012904 573.933