Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00656 ATGACGAAATCTTCATTGCAAAACCAGAAGTCGGATAATAATGTTTCAAACCCCTTGCCAGCTAAAAAGCGAACAAGAAGAAGTGTTCCTAGGGATTCTCCTCCTCATCGTAGCTCAATTTATAGAGGAGTTACTAGCAGACATAGATGGACAGGAAGATATGAAGCTCATTTATGGGACAAGAACTGTTGGAATGAGTCTCAGAAGAAGAAAGGAAGACAAGTTTGGTTCTTATATGGTGGACGCGATATATATTCAGGAGCCTATGATGATGAACAAGCCGCAGCACATGCTTATGACCTAGCAGCTCTCAAATACTGGGGTCCCGACACCATTCTAAACTTTCCGCTACCAGCGTACCAAAAAGAACTGACAGAAATGGAAGGTCGATCACGAGAAGAATATATTGGATCATTGAGAAGAAAAAGCAGTGGTTTTTCTCGAGGAGTTTCCAAATATCGAGGTGTTGCCAGTAGACATCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTTTTTGGCAACAAATATCTATACCTTGGGACATATGCCACCCAAGAAGAAGCAGCAACTGCATATGATCTAGCAGCAATAGAGTACCGAGGACTAAACGCTGTAACCAACTTTGACCTCAGTCGCTACATCAAATGGCTGAAACCGACCAATCACGATTCCAGTATCAGCTATGACTTTAATCAGCAAAACCCTAATAATTCCCCTTCTTTTATGGGTATAAACCCAACTCAGAAACATGAACTAGGGTTTTTCCCAACTCAGCAAGAGCTGAGTCCAGTTGATCAGAGTTTAATCACACACACTCGACCTTCCTCTGCAACTTCAGCTCTAGGACTTCTTTTACAGTCCACAAAGTTTAAGGAAATGATGAAGATCAGTTACATCAATGACGGTTCTTTACCGGAGCCAGAAATGGAGGTGGAGGTGGAGGCGGCGCCGCTCCTTTTTCCTCGTGACTTACAGACACCTTTTGGCTTTGAAAACTCTCTAAGCTTTGGAGAAGAAGTTGACGTCATGTTCGGTGGTCTTAATTCATTTATTCCTCATAATTTTAATTCTGACTTTGATAACCAGGAGCTTGGAGAATCATCCATGGAGGAACTCGGGCAGTAG 1131 42.62 MTKSSLQNQKSDNNVSNPLPAKKRTRRSVPRDSPPHRSSIYRGVTSRHRWTGRYEAHLWDKNCWNESQKKKGRQVWFLYGGRDIYSGAYDDEQAAAHAYDLAALKYWGPDTILNFPLPAYQKELTEMEGRSREEYIGSLRRKSSGFSRGVSKYRGVASRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPTNHDSSISYDFNQQNPNNSPSFMGINPTQKHELGFFPTQQELSPVDQSLITHTRPSSATSALGLLLQSTKFKEMMKISYINDGSLPEPEMEVEVEAAPLLFPRDLQTPFGFENSLSFGEEVDVMFGGLNSFIPHNFNSDFDNQELGESSMEELGQ 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4475781 4478767 + Bpe000632.1 Bpe01g00656 97904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00656 376 MobiDBLite consensus disorder prediction 1 40 - -
Bpe01g00656 376 ProSiteProfiles AP2/ERF domain profile. 152 211 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 Gene3D AP2/ERF domain 40 117 IPR036955 GO:0003700|GO:0006355
Bpe01g00656 376 Gene3D AP2/ERF domain 151 213 IPR036955 GO:0003700|GO:0006355
Bpe01g00656 376 MobiDBLite consensus disorder prediction 1 21 - -
Bpe01g00656 376 ProSiteProfiles AP2/ERF domain profile. 40 116 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 347 - -
Bpe01g00656 376 SMART rav1_2 152 217 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 SMART rav1_2 40 122 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 347 - -
Bpe01g00656 376 SUPERFAMILY DNA-binding domain 151 213 IPR016177 GO:0003677
Bpe01g00656 376 CDD AP2 151 213 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 Pfam AP2 domain 151 203 IPR001471 GO:0003700|GO:0006355
Bpe01g00656 376 SUPERFAMILY DNA-binding domain 39 117 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00656 Bpe-Chr1:4475781 Bpe10g00586 Bpe-Chr10:12813198 2.74E-120 dispersed
Bpe01g00656 Bpe-Chr1:4475781 Bpe13g00463 Bpe-Chr13:12161863 1.78E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20809 PF00847 AP2 0.00017 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00656 K09285 - tcc:18589035 443.351