Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00794 TTTGGCTGTTTTTTTTTTCCAGATCGAAATCTAACCATGTCTAATTCACCTCAAAGAAAAATGGGTAGAGGAAAGATCGAGATCAAACGGATCGAAAACACTACAAATCGTCAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACCCGGGGTCGTCTCTACGAGTATGCAAATAATAGTGTTAAAGAAACAATTCGGCGGTATAAAAAGGTAAGCTGTAATTCGCCAAACACCGGCTCGATTTCAGAAGCCAATACTCAGTTTTACCAAGAAGAAGCTGATAAGCTCCGGACGCTGATTGGTAACTTGCAAAATTCAAACAAAAATATGATGGCAGAATCTGTAAGTTCCCTGCCTATGAATGAATTGAGAAAAATGGATGGTAAGTTAGAGAAAGCAATTAGCAAGATCAGATCCAAAAAGAATGAGCTGCTCTTTGCAGAAATTGAGTACATGCGCAAAAGGGAAATCGACTTGCACAACAATAATCAGCTTCTTCGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCAAAACACGAACGTGATGGGAGGAGGAAGCTTTGAACTAATGCAGTCTCAACAATATGATGTGAGAAAATATTTTCAAGTGAATGCATTACAACCCGACAATCAGGAGTATCCACGCCAAGACCACATGTCCCTTCAATTAGGGTAA 741 40.62 FGCFFFPDRNLTMSNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIRRYKKVSCNSPNTGSISEANTQFYQEEADKLRTLIGNLQNSNKNMMAESVSSLPMNELRKMDGKLEKAISKIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAENERNQQNTNVMGGGSFELMQSQQYDVRKYFQVNALQPDNQEYPRQDHMSLQLG 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8638153 8643381 + Bpe000780.1 Bpe01g00794 98042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00794 246 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 SUPERFAMILY SRF-like 22 96 IPR036879 GO:0003677|GO:0046983
Bpe01g00794 246 Coils Coil 114 134 - -
Bpe01g00794 246 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe01g00794 246 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 21 234 - -
Bpe01g00794 246 CDD MADS_MEF2_like 22 96 IPR033896 GO:0000977|GO:0045944
Bpe01g00794 246 Pfam K-box region 105 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe01g00794 246 Gene3D - 33 116 IPR036879 GO:0003677|GO:0046983
Bpe01g00794 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Bpe01g00794 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 234 - -
Bpe01g00794 246 Coils Coil 144 171 - -
Bpe01g00794 246 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00794 Bpe-Chr1:8638153 Bpe02g01071 Bpe-Chr2:13324724 8.06E-100 dispersed
Bpe14g00486 Bpe-Chr14:4328779 Bpe01g00794 Bpe-Chr1:8638153 2.21E-25 dispersed
Bpe01g00794 Bpe-Chr1:8638153 Bpe01g00795 Bpe-Chr1:8708264 3.28E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20818 PF01486 K-box 1.40E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00794 K09264 - qsu:112006550 370.163