Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00795 TTTCCAGATCGAAATCTAACCATGTCTAATTCACCTCAAAGAAAAATGGGTAGGGGAAAGATCGAGATCAAACGGATCGAAAACACTACAAATCGTCAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATAGTCTTCTCCACCCGGGGTCGTCTCTACGAGTATGCAAATAACAGTGTCAAAGAAACAATTAGGAGGTATAAAAAAGTAAGCTGTAATTCGCCAAACACCGGCTCGATTTCGGAAGCTAATGCTCAGTTTTACCAAAAAGAAGCTGATAAGTTCCGGACGCTGATTGCTAACTTGCAAAATTCAAACAAAAATATGATGGCAGAATCTGTAAGTTCCCTGCCTATGAATGAATTGAGAAAAATGGATGGTAAGTTAGAGAAAGCAATTAGCAAGATCAGATCCAAAAAGAATGAGCTGCTCTTTGCAGAGATTGAGTACATGCGCAAAAGGGAAATCGACTTGCACAACAATAATCAGCTTCTTCGAGCGAAGATAACAGAGAATGAGAGAAACCAGCAAAACATGAACGTGATGGGAGGAAGAAGCTTTGAACTAATGCAGTCTCAACAATTTGACGTGAGAAACTATTTTCAAGTGAATGCATTACAACCCACCACTCAGGAGTATCCACGTCATGACCACATGTCCCTTCAATTAGGGTAA 726 40.77 FPDRNLTMSNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIRRYKKVSCNSPNTGSISEANAQFYQKEADKFRTLIANLQNSNKNMMAESVSSLPMNELRKMDGKLEKAISKIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKITENERNQQNMNVMGGRSFELMQSQQFDVRNYFQVNALQPTTQEYPRHDHMSLQLG 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8708264 8714270 + Bpe000781.1 Bpe01g00795 98043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00795 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe01g00795 241 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Bpe01g00795 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe01g00795 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 Coils Coil 102 129 - -
Bpe01g00795 241 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 16 229 - -
Bpe01g00795 241 SUPERFAMILY SRF-like 17 91 IPR036879 GO:0003677|GO:0046983
Bpe01g00795 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 Coils Coil 139 166 - -
Bpe01g00795 241 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Bpe01g00795 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Bpe01g00795 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00795 Bpe-Chr1:8708264 Bpe02g01071 Bpe-Chr2:13324724 2.38E-98 dispersed
Bpe01g00794 Bpe-Chr1:8638153 Bpe01g00795 Bpe-Chr1:8708264 3.28E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20819 PF01486 K-box 4.40E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00795 K09264 - qsu:112006550 358.607