Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00841 ATGAGGCATTCTTCTACTGGTTTCAGTTCTCAAAACGAAGAAGGTGAAAGGAGGTTTCTGAATTCCGAGCTTTGGCATGCCTGTGCAGGTCCCCTTGTTTCGCTACCTGCTGTCGGAAGCCGTGTTGTTTATTTTCCTCAGGGTCATAGTGAGCAGGTTGCTGCATCCACAAACAAAGAAGTCGATGCTCATATCCCAAACTATCCAAGTTTGCCACCACAACTAATCTGTCAACTTCACAATGTGACCATGCATGCAGATGTCGAGACAGATGAAGTGTACGCTCAAATGACCTTGCAGCCACTGAGCCCTGAAGAGCAAAAAGAAGCATACCTTCCTTCTGAGTTGGGAACCCTGAGCAAACAGCCAACAAATTATTTTTGCAAAACCTTGACCGCTAGTGATACAAGTACTCATGGAGGGTTTTCTGTGCCTCGACGAGCAGCTGAAAAAGTGTTTCCTCCACTGGACTTCTCTCAGCAGCCTCCGGCACAGGAATTGATTGCAAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGCGGTCAGCCCAAAAGGCACCTCCTAACGACTGGATGGAGTGTTTTTGTCAGTGCAAAACGGCTTGTTGCTGGTGATTCTGTGCTCTTTATATGGAATGAGAAAAATCAGTTGTTACTTGGAATTCGCCGTGCAAGTCGACCACAAGCACTGATGCCTTCATCAGTTTTATCAAGTGACAGCATGCATTTAGGCCTTCTTGCTGCTGCAGCACATGCAGCTGCCACAAATAGCCGTTTCTCAATATTTTATAATCCAAGGGCTAGCCCATCTGAGTTTGTGATACCCTTGGCAAAGTATGTCAAAGCAGCCTATCATACTCGTGTTTCTGTTGGGATGCGGTTTAGAATGTTGTTTGAAACAGAAGAATCAAGTGTCCGTCGCTACATGGGAACAATAACTGGAATCAGTGATCTAGATCCTGCTCGCTGGCAAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAATGGCCGGAGAGAGACAACCAAGAGTGTCTCTATGGGAAATTGAGCCATTAACGACATTCCCAATGTATCCATCTCCATTTCCCCTTCGGCTCAAGCGACCATGGCCCACTGGACTGCCTGCTTTCAATGGAATAAAAGATGATGAAATGGGCCTGAATTCTCCATTGATGTGGCTACGAGGAGATGCTGGGGATCGAGGAATTCAATCTTTGAACATTCCAGGAATTGGTGTGGCAACATGGATGCAGCCAAGACTTGATGCTTCCATGCTTGGTTTGCAATCTGACATGTATCAAGCCATGGCTGCTGCTGCGCTGCAAGAGATGAGAGCTTCTGATCCATCTAAACTTCTTCAATTCCAGCACGCCCAAAACCTTTCGGGTCGATCACCTACTCTCATCCAGCCCCATATGCTACAAAGCTCTCAATCTCAACCAGCTTTTCTTCCAACTGATGAAGAAAGCCCACATCATTCTCAAGCACAATCTCAAACTCAATTGGATGCTCTTCAGGAGCAGATGAATCAACAGAAGCCATACAGTAATCAGCAGCAGCAGCAGCTGGTTGATCACCAGATTCCACCAAGCACTATTTCTACCATGTCTCAGTTTGCGTCGGCCTGTCAATCCCCATCACCGTCAGTGCAAACACTCCCATCACTATGCCCAAAAAAGAGCTTTTCCGAGTCCATTGTTGACCCAGTGATAAATCTTGTTATATCACCATTAGACAGCCTCTTATGCTCTTTTCCCCCAGATGAATCAACTCAGTTGCTTAATCTCCCTAGACCCAACTCATTGTTGCCTTCTTCTTCATGGCCTTCAAAGCAAGCTGCAGTTGATCCTCTGCTCTCCTCGAGTGCTTCGCAATATGTTATACCCAATTTAGATTATATCGGATCATCCCAAAATATCTCCCAAAATTCCGTTTCATTGCCACCATTTCCTGTTCGAGATTGCACGATTGATCCAGGAGGCACTGATCCCCAAGGCCGTCTATTATTTGGTGTTAATATAGAGTCGGCCTCTCTTTTAATGCAAAATGGAATGTCAAGCCTTAGGGGAGTCGGCAGTGATTGTGATTCATCGACTCTTCCCTTTTGTTCCAACTACATGAGCACCGCGGCTACCAATTTCATGGGGAATCCAACCTTGGCACCTTCCAGTTGCATTGATGAAGCGAGTTTCATGCAGTCCACAGAAAATGTGGGCCAAGTAAATCCACCGATGAGAACCTTTGTTAAGGTTTACAAGTTGGGGTCCTTTGGTAGGTCATTGGATATTACAAAATTCAGCAGCTACCATGAGCTACGAAGTGAGCTTGCTCGAATGTTTGGGCTTGAAGGCGAGCTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAGAATGATGTTCTTCTCCTCGGAGATGGGCCCTGGCCGGAATTCGTGAATAGTGTTTGGTGCATAAAAATTTTATCACCTCAAGAAGTTCAAGAGATGGGAAAACGAGGCCTTGAGCTCTTGAACTCGGTACCAATTCAGAGGCTTTCCAACAGCAGTTGTGATAACTATGCAACTCGTCAGGACTCCAGAAACTTGGCTACGGGGATTACTTCTGTCGGGTCCATAGATTATTGA 2661 45.89 MRHSSTGFSSQNEEGERRFLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPEEQKEAYLPSELGTLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQALMPSSVLSSDSMHLGLLAAAAHAAATNSRFSIFYNPRASPSEFVIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWQNSHWRSVKVGWDESMAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPAFNGIKDDEMGLNSPLMWLRGDAGDRGIQSLNIPGIGVATWMQPRLDASMLGLQSDMYQAMAAAALQEMRASDPSKLLQFQHAQNLSGRSPTLIQPHMLQSSQSQPAFLPTDEESPHHSQAQSQTQLDALQEQMNQQKPYSNQQQQQLVDHQIPPSTISTMSQFASACQSPSPSVQTLPSLCPKKSFSESIVDPVINLVISPLDSLLCSFPPDESTQLLNLPRPNSLLPSSSWPSKQAAVDPLLSSSASQYVIPNLDYIGSSQNISQNSVSLPPFPVRDCTIDPGGTDPQGRLLFGVNIESASLLMQNGMSSLRGVGSDCDSSTLPFCSNYMSTAATNFMGNPTLAPSSCIDEASFMQSTENVGQVNPPMRTFVKVYKLGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNSSCDNYATRQDSRNLATGITSVGSIDY 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15864973 15870171 - Bpe000844.2 Bpe01g00841 98089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00841 886 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bpe01g00841 886 Gene3D - 291 363 - -
Bpe01g00841 886 PANTHER AUXIN RESPONSE FACTOR 6 1 865 - -
Bpe01g00841 886 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bpe01g00841 886 Gene3D - 749 842 - -
Bpe01g00841 886 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bpe01g00841 886 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe01g00841 886 Gene3D - 125 228 IPR015300 -
Bpe01g00841 886 ProSiteProfiles PB1 domain profile. 753 837 IPR000270 GO:0005515
Bpe01g00841 886 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 865 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe01g00841 886 SMART B3_2 127 229 IPR003340 GO:0003677
Bpe01g00841 886 SUPERFAMILY CAD & PB1 domains 751 828 - -
Bpe01g00841 886 MobiDBLite consensus disorder prediction 481 508 - -
Bpe01g00841 886 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bpe01g00841 886 Pfam AUX/IAA family 747 842 IPR033389 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe01g00841 Bpe08g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00841 Bpe-Chr1:15864973 Bpe11g01233 Bpe-Chr11:9210760 0 dispersed
Bpe04g01672 Bpe-Chr4:22750640 Bpe01g00841 Bpe-Chr1:15864973 4.56E-81 dispersed
Bpe15g01331 Bpe-Chr15:21462163 Bpe01g00841 Bpe-Chr1:15864973 8.84E-86 dispersed
Bpe08g00619 Bpe-Chr8:5031688 Bpe01g00841 Bpe-Chr1:15864973 0 transposed
Bpe01g00841 Bpe-Chr1:15864973 Bpe11g01082 Bpe-Chr11:8124146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20822 PF02309 AUX_IAA 9.30E-07 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00841 - - jre:109011079 1374.76