Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe01g00864 ATGGAAACCAGCTTCGACAATCACCACCGGACGTTTCTGAATGAGGAAGATGGCAGTGATTCTGAATCTCCTCCTTCTTCTGCCTCCATTAAAAAACCCAGGAAATCGGTACAGAAGAGGGTTATTTCAGTCCCGATCAAGGAAATGGAAGAGGAAAAGATGAAGAGAGAAATCGCCATTGGCAGTAACTGTAGCAGTAGCTTTCCACCCTCCGATTCATGGTCATGGAGAAAGTACGGTCAGAAACCCATCAAAGGGTCACCTTATCCCAGAGCCTATTACAGATGTAGTAGCTCAAGAGGATGCCCTGCCAGAAAACAAGTAGAAAGAAGCAGAGCTGATCCCACTACGCTTCTCGTCACCTACTGCTGCGACCACAATCATCCGGCCAATGCTTCAAGAAATAAGAATCAACCCAATAATTCCGCCGCGGCTAAACAGAGACAACCCATAATTCTCCAAGATAACCGGAAATTGGAAAGTGAGCCGGAGCCAGATGAGAAATTCAGCGATGACTTCGGTTGGCTCAGCGACATGGAGGCTACTCCCTCGACGATACTGGAGAGTCCAATTTATGTTAAGACAACCACCGTAGTTGACGGAGCTTTATTTCAGATGAGGGAGGAGGACGAGTCTCTCTTTGCCGATCTTGACGAGTTGCCGGAATGTTCCCTCGTATTCCGGCGAGGACGGCCTGTGCAAATCAACGACGAACAGCTTCGGCAGTTTACTTCTCCGTGCTGTGGGACCACCAGCTGA 759 48.75 METSFDNHHRTFLNEEDGSDSESPPSSASIKKPRKSVQKRVISVPIKEMEEEKMKREIAIGSNCSSSFPPSDSWSWRKYGQKPIKGSPYPRAYYRCSSSRGCPARKQVERSRADPTTLLVTYCCDHNHPANASRNKNQPNNSAAAKQRQPIILQDNRKLESEPEPDEKFSDDFGWLSDMEATPSTILESPIYVKTTTVVDGALFQMREEDESLFADLDELPECSLVFRRGRPVQINDEQLRQFTSPCCGTTS 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17885094 17886059 + Bpe000872.1 Bpe01g00864 98112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe01g00864 252 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 22 236 IPR044810 GO:0003700
Bpe01g00864 252 Gene3D WRKY domain 56 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe01g00864 252 MobiDBLite consensus disorder prediction 130 175 - -
Bpe01g00864 252 ProSiteProfiles WRKY domain profile. 71 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe01g00864 252 SMART WRKY_cls 70 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe01g00864 252 MobiDBLite consensus disorder prediction 130 149 - -
Bpe01g00864 252 MobiDBLite consensus disorder prediction 1 17 - -
Bpe01g00864 252 SUPERFAMILY WRKY DNA-binding domain 67 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe01g00864 252 MobiDBLite consensus disorder prediction 153 174 - -
Bpe01g00864 252 MobiDBLite consensus disorder prediction 1 39 - -
Bpe01g00864 252 MobiDBLite consensus disorder prediction 18 32 - -
Bpe01g00864 252 Pfam WRKY DNA -binding domain 72 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe01g00864 252 PANTHER OS01G0750100 PROTEIN 22 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00864 Bpe-Chr1:17885094 Bpe02g01076 Bpe-Chr2:13674350 1.11E-65 dispersed
Bpe01g00864 Bpe-Chr1:17885094 Bpe02g01046 Bpe-Chr2:11410084 1.25E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20824 PF03106 WRKY 2.70E-24 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe01g00864 - - vvi:100244564 232.646