Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00007 ATGGCTGACCCTTACTCCAATCTCCTTACTGGTCTCTTCAAGCTCAATACAGTCCACCATACCCAACCTTCTCCTTTTCCAAACCCTCCGCCGCCGCCTCTTTTCTCCCAACCCTTTTTCCACCACCAAACTCCGCCGCCTTCTCCCCCTCTCAGGCAGGCCCTCCCCCTCCTCAGCCTCACCCCACTCAACCAACAACATCAACAACAACAAGATCAATTTCACCGCTCTTCCTCTACCGCCATGGAAGTGGATCAGAAAAGCTTCAAACAGAAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGACGATGACATGGCTTCTGTAACCGTTGCCCTTCATATAGGTTTACCTAGCCCTAGTTCAGCTGAGCTTGCTTCTATTCTCTCTGCTTCTTCATCTGAAATCACTGATCTTAAAGATCATGGAGACGGAGATGATTTAGGGTACCCTATAAACAGGCTAAACAAGGGTCAGTATTGGATCCCTACTCCATCTCAGATTCTCATCGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGTAAGACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAATATAGAAGAGGGCCAGAATCACTGAGAGGTACACAACCAACAGGAATGCTAAGGCTTCCTTGCTACTGCTGTGCAACGGGATGCAGAAACAACATAGACCATCCGAGGGCTAAACCACTGAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAGCCTTTTATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTATCTGCGGGTCTGATTTTAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAAGAGCATGCAGCTTATGGAATCGATGGGTTTGAAGAAGATGATGAACCGGCCTCTGAGGTTGAACAAGATAATGAATCT 1002 45.61 MADPYSNLLTGLFKLNTVHHTQPSPFPNPPPPPLFSQPFFHHQTPPPSPPLRQALPLLSLTPLNQQHQQQQDQFHRSSSTAMEVDQKSFKQKEEEEEEEEEEDDDMASVTVALHIGLPSPSSAELASILSASSSEITDLKDHGDGDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHAAYGIDGFEEDDEPASEVEQDNES 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 71469 73335 + Bpe025041 Bpe02g00007 98156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00007 334 SMART c2h2final6 259 279 IPR013087 -
Bpe02g00007 334 SMART c2h2final6 175 197 IPR013087 -
Bpe02g00007 334 MobiDBLite consensus disorder prediction 23 53 - -
Bpe02g00007 334 MobiDBLite consensus disorder prediction 58 85 - -
Bpe02g00007 334 PANTHER ZINC FINGER PROTEIN WIP2 1 334 IPR043584 GO:0003700|GO:0010468
Bpe02g00007 334 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 334 - -
Bpe02g00007 334 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Bpe02g00007 334 Gene3D Classic Zinc Finger 174 197 - -
Bpe02g00007 334 SUPERFAMILY beta-beta-alpha zinc fingers 171 197 IPR036236 -
Bpe02g00007 334 SUPERFAMILY beta-beta-alpha zinc fingers 241 279 IPR036236 -
Bpe02g00007 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Bpe02g00007 334 Coils Coil 82 102 - -
Bpe02g00007 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 279 IPR013087 -
Bpe02g00007 334 MobiDBLite consensus disorder prediction 18 106 - -
Bpe02g00007 334 Gene3D Classic Zinc Finger 237 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00007 Bpe-Chr2:71469 Bpe06g00633 Bpe-Chr6:17106550 4.49E-129 dispersed
Bpe13g01331 Bpe-Chr13:18557497 Bpe02g00007 Bpe-Chr2:71469 1.16E-99 transposed
Bpe02g00007 Bpe-Chr2:71469 Bpe04g00552 Bpe-Chr4:3498947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20827 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00007 - - jre:108986074 477.633