Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00019 ATGCAGTCTACTAACTCAGAGCTTCACATGTCGACGCCGGGACGACAGTCAATGCAAAGCTTTTGCAGTTCTTCGTCGTATCACCCTCTTCATGTTTCTGTAATTTCAGAGACTACTCAATCTCCCCAGAGGAGAGCTCTTGCTGCTCTTAGGAACCATAAGGAGGCCGAGAGGAGGAGGAGACAGAATATCAACTCTCATCTCAATAAGCTTCGTAATCTTCTTCCTTGTAATTCTAAGACCGACAAAGCTTCTCTTCTTGCAAAAGTTGTTCAACGCGTGAAAGAGTTAAAGCAACAAGCCTCTGAAATAGCTGGGATCGAGAGTTTCCCTTCCGACACAGACGAAATCTCGGTGTCGTCCGGATGTTTTTCCGGCGACGGGAGATTGATTTATAAAGCCTCTTTGTGCTGTGACGACCGATCAGACGTAATAGCGGACCTCATCGAAATCCTAAACTCTCTCCACTTAAAAACTCTCAGAGCTGAAATGGCAACTCTCGGAGGGAGGACACGAAAGGTTCTCATTGTCGCTGCCGATAAAGATCACGGCATCGAATCCGTTAATTTCCTTGAAAATGCATTAAAGTCTTTGGTCGAACGCTCAGATTCCACCGACAGATCCAAGAGAAGACAGTGTTTCGCTCGCAACGCAGCATCTAATAATTGA 669 45.89 MQSTNSELHMSTPGRQSMQSFCSSSSYHPLHVSVISETTQSPQRRALAALRNHKEAERRRRQNINSHLNKLRNLLPCNSKTDKASLLAKVVQRVKELKQQASEIAGIESFPSDTDEISVSSGCFSGDGRLIYKASLCCDDRSDVIADLIEILNSLHLKTLRAEMATLGGRTRKVLIVAADKDHGIESVNFLENALKSLVERSDSTDRSKRRQCFARNAASNN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 186149 187156 + Bpe007881.1 Bpe02g00019 98168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00019 222 CDD bHLH_AtAIG1_like 45 121 - -
Bpe02g00019 222 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Bpe02g00019 222 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 216 - -
Bpe02g00019 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 104 IPR036638 GO:0046983
Bpe02g00019 222 PANTHER TRANSCRIPTION FACTOR BHLH30 14 216 IPR045847 GO:0003700|GO:0006355
Bpe02g00019 222 SMART finulus 54 103 IPR011598 GO:0046983
Bpe02g00019 222 Coils Coil 54 74 - -
Bpe02g00019 222 MobiDBLite consensus disorder prediction 1 23 - -
Bpe02g00019 222 Gene3D - 44 106 IPR036638 GO:0046983
Bpe02g00019 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00019 Bpe-Chr2:186149 Bpe10g00926 Bpe-Chr10:14860690 6.67E-46 dispersed
Bpe02g01095 Bpe-Chr2:14569522 Bpe02g00019 Bpe-Chr2:186149 6.03E-35 transposed
Bpe02g00019 Bpe-Chr2:186149 Bpe04g00598 Bpe-Chr4:3813447 1.39E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20831 PF00010 HLH 3.00E-11 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00019 - K22484 qsu:111998080 287.345