Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe02g00025 | ATGAGGGAGGACGACTCTAATTGGTTCTCTAGGTGGGAGGAAGAGCTCCCATCTCCTGACGAATTAATGCCTTTATCCCAAACCCTAATCACCCCTGATCTCGCTCTCGCTTTTGAAATCCGAAGTCCATCCAATACTTGCCCCCAGCAAGGCCCTCCGCCTCCAACTCTTTCCAATCATTTAGCTTCCTCAGCTGCTGCTGGCTGCGGTGGAGCCGCTACTCAACCCAACTCCTCCGAGTTTGCAGATTCCGCCGATTTGGGTTCTGGAGCTGCTGGCGATGAACCGGCAAGGACCCTCAAGCGGCCGCGGCTTGTTTGGACGCCTCAGCTCCACAAGCGGTTCGTAGATGCGGTGGCGCATTTGGGGATCAAGAATGCTGTCCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGAGAGAACGTGGCTAGCCATTTACAGAAGTACCGCCTTTATTTGAAACGAGTGCAGGGATTATCAAGCGGGAGCGGTGGAGGAGCTGCCGTAGGAGTGGCCGGAGGAGTTGATCCTGCTACCGATCATTTGTTTGCCAGCTCTCCAGTTCCGCCGCATTTCTTGCACCCACACCCAGGCCGCCCCAGTTCCGACCATTTCTTGCCTTTTGTCCCAGTTGCAGCTTTGCAGCAGCAGCACCATCACCACCAGCAGATTGCTGCAGCAGCTGCCCATCCTCAGCTACAGCCTCAGTATCACAGACAGGTCGGCCATTTTGGGTCACCTCCAAATGGGCAATACGAGCATCCGTTTTTAGCGAGGCAGACTCAGCCAGTTCACCGGGTGGGTGCACCATTGCACAATTCGATGCTGAATCACGTCGAGGACTTGGAATCTGCTAACGCCACTGGAGGGAGGAAGGTTCTTACTCTGTTTCCAACTGGGGATGACTAA | 921 | 54.4 | MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFEIRSPSNTCPQQGPPPPTLSNHLASSAAAGCGGAATQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRVQGLSSGSGGGAAVGVAGGVDPATDHLFASSPVPPHFLHPHPGRPSSDHFLPFVPVAALQQQHHHHQQIAAAAAHPQLQPQYHRQVGHFGSPPNGQYEHPFLARQTQPVHRVGAPLHNSMLNHVEDLESANATGGRKVLTLFPTGDD | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 215854 | 216774 | + | Bpe007884.1 | Bpe02g00025 | 98174 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe02g00025 | 306 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 103 | 155 | IPR006447 | GO:0003677 | |
| Bpe02g00025 | 306 | Gene3D | - | 99 | 161 | - | - | |
| Bpe02g00025 | 306 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 306 | - | - | |
| Bpe02g00025 | 306 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 107 | 158 | IPR017930 | - | |
| Bpe02g00025 | 306 | MobiDBLite | consensus disorder prediction | 43 | 96 | - | - | |
| Bpe02g00025 | 306 | SUPERFAMILY | Homeodomain-like | 99 | 159 | IPR009057 | - | |
| Bpe02g00025 | 306 | Pfam | Myb-like DNA-binding domain | 106 | 154 | IPR001005 | - | |
| Bpe02g00025 | 306 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 306 | IPR044841 | GO:0003700|GO:0006355 | |
| Bpe02g00025 | 306 | MobiDBLite | consensus disorder prediction | 70 | 84 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe02g00025 | Bpe-Chr2:215854 | Bpe02g02148 | Bpe-Chr2:22793869 | 1.97E-23 | dispersed | |
| Bpe08g00093 | Bpe-Chr8:515257 | Bpe02g00025 | Bpe-Chr2:215854 | 3.92E-42 | transposed | |
| Bpe02g00025 | Bpe-Chr2:215854 | Bpe04g00533 | Bpe-Chr4:3389074 | 2.42E-174 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20833 | PF00249 | Myb_DNA-binding | 2.30E-08 | CL0123 | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe02g00025 | - | - | csv:101216969 | 429.483 |