Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00056 ATGTTGTGGGTTGACAAGTACCGTCCCAAAACCCTAGACCAGATCGTGGTCCACCAAGACGTCGCTCAGAACCTCAAGAAATTGGTTACGGAGCAGGACTGCCCACATTTACTCTTCTATGGACCTCCCGGCTCAGGAAAGAAAACCCTAATCATGGCCTTAATTCGACAGATGTTCGGACCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACATGGAAAGTGGATGCTGGAAGTCGAAGTATTGATATAGAGTTGACAACATTATCTAGTGCAAACCATGTGGAATTAAATCCCAGTGATGCAGGTTTTCAAGATAGGTACATTGTTCAAGAGATAATAAAGGAAATGGCAAAGAATAGACCAATTGACACAAAGGGAAGAAAAGGATATAAAGTGTTAGTTCTCAATGAAGTTGACAAACTCTCAAGAGAAGCGCAGCATTCTCTACGCAGAACAATGGAGAAGTATAGTTCTTATTGCAGGTTAATACTTTGCTGTAATAGTTCGTCAAGAGTTACGGAAGCCATTAGGTCTCGATGTCTTAATGTTCGGATTAATTCACCGACAGAAGAACAGATTGTTAAGGTGTTAGAGTTTATGGGGAAGAAAGAAGGACTGCAGATTCCATCTGGATTTGCTGGTCGTATTGCAGAAAAATCAAATCGGAGTTTAAGGAGGGCTATATTGTCTTTGGAGACTTGTCGCGTGCAACAGTATCCTTTTAGTGGCAGTCAAGTCATACCACCAATGGATTGGGAGGAATATGTGGCCGAGATATCATCTGACATAATGAAGGAGCAGAGCCCTAAGAGATTGTTTGAGGTTCGAGGAAAGTTGTATGAGCTTCTCGTGAACTGTATTCCTGCAGAGATTATCTTAAAGAGATTACTATACGAACTGCTCAAAAAATTGGATGCCGAATTAAAGCATGAGATTTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAAAAAGCCATCTTTCACCTTGAAGCATTTGTGGCCAAATTCATGAGTATATACAAGACGTTCCTCGTATCGACATTTGGGTGA 1065 41.69 MLWVDKYRPKTLDQIVVHQDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALIRQMFGPSAEKVKVENKTWKVDAGSRSIDIELTTLSSANHVELNPSDAGFQDRYIVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINSPTEEQIVKVLEFMGKKEGLQIPSGFAGRIAEKSNRSLRRAILSLETCRVQQYPFSGSQVIPPMDWEEYVAEISSDIMKEQSPKRLFEVRGKLYELLVNCIPAEIILKRLLYELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKTFLVSTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 436432 443721 - Bpe007911.1 Bpe02g00056 98205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00056 354 CDD AAA 16 181 - -
Bpe02g00056 354 Gene3D - 190 250 - -
Bpe02g00056 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Bpe02g00056 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Bpe02g00056 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Bpe02g00056 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Bpe02g00056 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Bpe02g00056 354 Gene3D - 1 189 IPR027417 -
Bpe02g00056 354 SMART AAA_5 33 192 IPR003593 -
Bpe02g00056 354 CDD HLD_clamp_RFC 189 257 - -
Bpe02g00056 354 Gene3D - 252 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00056 Bpe14g00388 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00056 Bpe-Chr2:436432 Bpe13g00897 Bpe-Chr13:15027056 1.76E-51 dispersed
Bpe01g00787 Bpe-Chr1:8304576 Bpe02g00056 Bpe-Chr2:436432 5.78E-07 transposed
Bpe10g00121 Bpe-Chr10:2248262 Bpe02g00056 Bpe-Chr2:436432 4.11E-49 transposed
Bpe14g00388 Bpe-Chr14:3651418 Bpe02g00056 Bpe-Chr2:436432 3.57E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00056 K10756 - jre:109000861 638.262