Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00075 ATGGCTAAGGAGGTATACACCAAGGAAGATTTGCTTGTCTGTTTACAGGAGCTTCAAATCGATTTCTCTAAGTACGAACATCCTGCTGTTTTGACTGTAGAAGCTCAGGAAAAATATGTGGGGAACCTGGGTTATGGACTGAGTAAAAATTTGTTCTTGAAGGATAAGAAAAATAGATATTATATTGTCTCCGCTCTTGCAAACACCAAAGTGGATCTGAAAGGCATGGGATTTTTTAACTGTGCAGTTTTATCTACGAGGCTTGGTTTGGGTAAAGGAGGTTTGAGGATGGCTCCTGAAGAAGCATTGGGTGAAAAACTAAAAGTGTCATTGGGTTCTGTAACTCCATTTGCACTTATCAACAAATCAGCACGAGATGTCTCCTTATTATTGGATTGTGGATTTAAAAGTCAGGATCGATGCGTCTTCCATCCACTTTCGAATGAGATGTCCATCACTCTTAATTATTGCGACATCGACAAGTTTCTTAAGTCGATTGGAAGAGACCCTTCATATGTTGATCTGGAGGCTAATCCTCCAGTCAGTAAAGATCAACCTCCTGATCTTGCTGCTCTTGTCCCTTCTGAATCTTCCATTACATCTCATCAACCCGAGAAACCAGATTCTTTGCAAGCTGAAGCTACTCAAGAAAACCATGTCTCTGTTGACAAGATGCCAAAGACAGTCACTCCCAACAAGGTGAAACCATCAACTAATGTGCAGTCTGTCAAGAACAAACCAGTTGATGAAGTACGTCCTTCCTTCTCAAATGTTGAGAAATTTGTCGAAGAAATACTCGATAAAACATCAACAATTGTTCTTTCAGAGATAACAGAGGATAGTATTTCCCAACATGGAGAAAACCTTGGAACCGTCGTTACGACCAGAATCAAGAAACTTAGCTCCGAATTAAATCACCTGGCTATGATATTCAAGAACACTGCTTATACAGAGGGATTCAAAGCTGGAAATTCTCATCAAATGAAACATTATCAC 996 39.86 MAKEVYTKEDLLVCLQELQIDFSKYEHPAVLTVEAQEKYVGNLGYGLSKNLFLKDKKNRYYIVSALANTKVDLKGMGFFNCAVLSTRLGLGKGGLRMAPEEALGEKLKVSLGSVTPFALINKSARDVSLLLDCGFKSQDRCVFHPLSNEMSITLNYCDIDKFLKSIGRDPSYVDLEANPPVSKDQPPDLAALVPSESSITSHQPEKPDSLQAEATQENHVSVDKMPKTVTPNKVKPSTNVQSVKNKPVDEVRPSFSNVEKFVEEILDKTSTIVLSEITEDSISQHGENLGTVVTTRIKKLSSELNHLAMIFKNTAYTEGFKAGNSHQMKHYH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 573019 576816 + Bpe025056 Bpe02g00075 98224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00075 332 CDD PrdX_deacylase 8 173 - -
Bpe02g00075 332 Pfam Aminoacyl-tRNA editing domain 27 162 IPR007214 GO:0002161
Bpe02g00075 332 Gene3D - 1 182 IPR036754 GO:0002161
Bpe02g00075 332 MobiDBLite consensus disorder prediction 195 243 - -
Bpe02g00075 332 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 6 329 IPR040285 -
Bpe02g00075 332 SUPERFAMILY YbaK/ProRS associated domain 6 175 IPR036754 GO:0002161
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00075 - - - csv:101217512 447.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00075 Bpe_Chr02 FPKM 2.352265 1.861824 227.562134 233.532059 0.367426 0.290835 0.918551 20.329367 20.777349 18.044336