Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00081 ATGCATCATTTACCACAATTTCTATCTCCTAGGAAGCAGAATCGAGACATGGATCTGAGGAGGAACGGAAGACGCCCGAGGCTGAAGCGTAGTAATGCTGTGAAGTACATTGAGTACGATGCGGAGTCGTCGCCTTCGCTGGACAACTCATGGGGGTCTGCTTATACTCGGTCGCTTGACATATCACAGCAAACGAGCTTTCGTATTGAGGGAACTGGCGACGATTTTGAAGGATTATTTAAAAAATTGGGGCTATCGGGCCCGGAAGACACTGGTATTCCGGTGGCGGCTTGGGAGGCCAGGAAGGCTCAGTCTTGTTCGGATCGTCTAACGCTTCCGAAGATGCATCTACTGGACGAGAGCCCAATGGGAGAGGATGAAATCGACGAGGAGGAAAGAGAAGTAGAAGAGAAATTCTGTAAGAGAGACGTTAATTCCGTTAGAACTAGGAATTCTAATTTCGCTCAGAATAAACCTTCCGAGTTAATTAACAGTGGTGGTGGAGGGGAAAGAGGGGGGATTAAGGGTATCCGTCCGCCGGGGCTTAAGCCGCCGCCCAGTAGACCACTCCCTCTGATGGACAATATGTGCTCCACCTGGGATATTATGAAGAGTTTAGCTCCACCAGAGGAAGGGCATAACGTTTTTTCTTCCGAAGATGTTGATGACGGAGAAAATGTTGATCATCCCGCTGCCAAGGTAGACATCGGAAGGAATATGGTCAGTTTGCGAGAAAGCGTTGTTCTTTTGGAGTCACTTTCTTGTTCATTCACTACGTCAAACGACGATGATTCTTCGAGCTCCACAACCGAGCCATCCAACATTTCTCCCAACGAGAGAGGTAGGCGCACTATAATGAACTGGGAAAAGGGTCATCTTCTTGGGAGAGGCTCGTTCGGATCTGTATACAAAGGAATATCTGATGATGGATTCTTTTTCGCTGTTAAAGAAGTTTCATTGCTCGATCAAGACAACCAGGGCAGGCGCCGAGTTTATCAACTTGAGCAGTTTCTTTCCTCTCATTTATCCTCTGTTCTGCAGGAGATTGCCCTTCTCAGTCAGTTTGAGCACGAGAACATAGTTCGATATTATGGCACGGATAAGGATGAATCAAAACTCTACATCTTTCTCGAGCTTGTAAGTCAAGGCTCCCTTATGAATCTTTACCGGACTTATAATCTTCGAGACTCCCAAGTCTCTGTGTATACAAGACAGATTTTGAATGGCTTGAAATATCTCCATGACCGACATGTAATTCACAGGGATATCAAGTGTGCCAATATTTTGGTGGATACAAATGGGATAGTGAAGCTTGCAGATTTTGGACTGGCAAAGGCAACAAAACTGAATGATGTGAAATCCTGTCAGGGAACTCCATTCTGGATGGCACCCGAGGTTGTTAAAGGTGCCAACCGGGGGTACGGTCTTCCTGCTGATATCTGGAGTCTTGGATGTACTATCTTAGAGATGCTCACCCATCAGATTCCATACTCCGAATTCGAAAGTATGCAGGCTTTATACAGGATTGGAAAGGGCATTCCTCCTTCTATTCCGGACACTCTCTCGAACGATGCTCAAGATTTTATCCTGCAGTGCCTACAAGTTAATCCAGATGATCGCCCCACTGCTGTTCAACTATTACATCATCCATTTGTTAAGAGACCACTCCACACTTCTTCTGGATCAGCCTCACCATTCAATGGATCTTCTTCGCCTTACAGTCTCAGCAGAAGAAATTAA 1740 45.98 MHHLPQFLSPRKQNRDMDLRRNGRRPRLKRSNAVKYIEYDAESSPSLDNSWGSAYTRSLDISQQTSFRIEGTGDDFEGLFKKLGLSGPEDTGIPVAAWEARKAQSCSDRLTLPKMHLLDESPMGEDEIDEEEREVEEKFCKRDVNSVRTRNSNFAQNKPSELINSGGGGERGGIKGIRPPGLKPPPSRPLPLMDNMCSTWDIMKSLAPPEEGHNVFSSEDVDDGENVDHPAAKVDIGRNMVSLRESVVLLESLSCSFTTSNDDDSSSSTTEPSNISPNERGRRTIMNWEKGHLLGRGSFGSVYKGISDDGFFFAVKEVSLLDQDNQGRRRVYQLEQFLSSHLSSVLQEIALLSQFEHENIVRYYGTDKDESKLYIFLELVSQGSLMNLYRTYNLRDSQVSVYTRQILNGLKYLHDRHVIHRDIKCANILVDTNGIVKLADFGLAKATKLNDVKSCQGTPFWMAPEVVKGANRGYGLPADIWSLGCTILEMLTHQIPYSEFESMQALYRIGKGIPPSIPDTLSNDAQDFILQCLQVNPDDRPTAVQLLHHPFVKRPLHTSSGSASPFNGSSSPYSLSRRN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 608986 613138 - Bpe007931.1 Bpe02g00081 98230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00081 579 Pfam Protein kinase domain 289 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00081 579 SUPERFAMILY Protein kinase-like (PK-like) 287 557 IPR011009 -
Bpe02g00081 579 MobiDBLite consensus disorder prediction 1 27 - -
Bpe02g00081 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Bpe02g00081 579 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 24 121 - -
Bpe02g00081 579 SMART serkin_6 288 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00081 579 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 172 561 - -
Bpe02g00081 579 MobiDBLite consensus disorder prediction 257 281 - -
Bpe02g00081 579 MobiDBLite consensus disorder prediction 558 579 - -
Bpe02g00081 579 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 172 561 - -
Bpe02g00081 579 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 24 121 - -
Bpe02g00081 579 PRINTS Tyrosine kinase catalytic domain signature 412 430 IPR001245 GO:0004672|GO:0006468
Bpe02g00081 579 PRINTS Tyrosine kinase catalytic domain signature 377 390 IPR001245 GO:0004672|GO:0006468
Bpe02g00081 579 PRINTS Tyrosine kinase catalytic domain signature 478 500 IPR001245 GO:0004672|GO:0006468
Bpe02g00081 579 PRINTS Tyrosine kinase catalytic domain signature 521 543 IPR001245 GO:0004672|GO:0006468
Bpe02g00081 579 MobiDBLite consensus disorder prediction 257 282 - -
Bpe02g00081 579 Gene3D Transferase(Phosphotransferase) domain 1 286 569 - -
Bpe02g00081 579 ProSiteProfiles Protein kinase domain profile. 288 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00081 579 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Bpe02g00081 579 MobiDBLite consensus disorder prediction 157 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00081 K13414 MEKK1; mitogen-activated protein kinase kinase kinase 1 [EC:2.7.11.25] - pop:7460930 616.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00081 Bpe14g00364 CCT
Bpe02g00081 Bpe02g01619 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00081 Bpe-Chr2:608986 Bpe12g00747 Bpe-Chr12:12984004 5.18E-135 dispersed
Bpe04g00813 Bpe-Chr4:5360058 Bpe02g00081 Bpe-Chr2:608986 4.92E-30 dispersed
Bpe05g00880 Bpe-Chr5:21947934 Bpe02g00081 Bpe-Chr2:608986 2.50E-27 dispersed
Bpe03g00140 Bpe-Chr3:1911806 Bpe02g00081 Bpe-Chr2:608986 2.56E-79 transposed
Bpe05g00067 Bpe-Chr5:1199237 Bpe02g00081 Bpe-Chr2:608986 8.07E-66 transposed
Bpe06g00295 Bpe-Chr6:14077626 Bpe02g00081 Bpe-Chr2:608986 2.33E-78 transposed
Bpe12g00439 Bpe-Chr12:10156906 Bpe02g00081 Bpe-Chr2:608986 2.51E-79 transposed
Bpe14g00364 Bpe-Chr14:3471716 Bpe02g00081 Bpe-Chr2:608986 1.64E-135 wgd
Bpe02g00081 Bpe-Chr2:608986 Bpe02g01619 Bpe-Chr2:19064137 0 wgd
Bpe02g00081 Bpe-Chr2:608986 Bpe04g00476 Bpe-Chr4:3007360 3.36E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g328 . Blo12g00687 . . Bpe02g00081 . . Bma01g02638 Cmo04g02435 Cmo15g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00197 Blo18g00199 Bda11g00746 Bda01g01408 Bpe02g01619 Bpe14g00364 Bma01g00841 Bma02g00241 . . . . . Car04g02247 Car15g00659 Cpe01g02021 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002867 2 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 1 5 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63145 PF00069 Pkinase 4.70E-67 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00081 Bpe_Chr02 FPKM 3.829468 3.186502 33.007923 32.817844 75.563248 65.525566 76.076508 25.034451 25.498075 24.708393