Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00087 ATGGCGGAGTCAGCATCAGACGCTTGTAATTTTCATACCCAGATCGTAATCAAGCCTTCGCCACTGCCATTACCAGCCGATTGCCTCGAAAACCTCCAAGAAGATCGAATTCCTTTCTTTCATTCGGGTTCTCTCCGCCGACGGGGTGATACCTGGGTCATCTCCGTCTTCGTGATTCTCCATATCTTGGTCTTCGCAGCCACCATGTTCGTCAATGACTGCTGGCGTAACTCTCATCAACAGTGTGCTCTCAAGTCTCTAGGGAGATTTTCCTTTCAGCCTCTCACCGAGAATCCCTTCCTCGGTCCTTCTGCTTCTACGTTAGAGATTGACAAAATGGGAGCTCTAAGGAAAAATACTTTACCTCAACAGACTTGGCGACTGTTCGCATTTCCATGTTTACACGCTGGAGCTATCCACCTTATCATCAATCTTTGCAGTGTTGTATTTGTAGGGATTCACTTAGAGCAGGAATTTGGGCAACTGAGGATCGCGATAATCTATCCACTATCTGGTTTTGTTGGAACCTTGGTGGCCGCACTTTTTGTCCAAGACAGTCCGTCGGTTGGTTCCTCTGGAGCTCTATATGGATTAATTGGAGCTGTGTTTTCTGGACTTATATGGAACTGGAAAGTTTACTCTCACAAGTGTGAAGCTCTAGTATCCCTCTTTTTGGTGTTATTAGTCAATTTTGGTCTTGGTCTCTTGCCTTATGTGGATAATTTTGCAAACATAGGAGGCTTAATATCAGGATTTCTTTTGGGGTTTTTGCTTTTTTTCACCCTTCCAATAACGCAAGTGGCTAAAAGTAAGGCAGACCTTTTCAACGACAGTTTCAAAAACCATATGAAGCTAAAAATAAAGCAGAAACTTAACAGGCCTGTTCTCCGAAGTTGTTCACTTCTTCTATTCGGTCTCATACTCGCTGGATGCCTCGTTGCAGTTCTTTGTGGCATTAACCTGAGCCAGTACTGCAAATGGTGTCAACACATTGATTGTATTCCTTCAAAAATATGGAACTGTCAAGGCAATGCATTCTCTTGTCAGACAATGGTTAGCAATGAGCAATTGACATTGACATGTTTGGGGAATGGGAATTTCAGAGTATTCCCCTTCAGCAACATTTCCCAAGAAAGGGTGCAGGATTTATGTAGCATGATATGCTCATAA 1170 43.42 MAESASDACNFHTQIVIKPSPLPLPADCLENLQEDRIPFFHSGSLRRRGDTWVISVFVILHILVFAATMFVNDCWRNSHQQCALKSLGRFSFQPLTENPFLGPSASTLEIDKMGALRKNTLPQQTWRLFAFPCLHAGAIHLIINLCSVVFVGIHLEQEFGQLRIAIIYPLSGFVGTLVAALFVQDSPSVGSSGALYGLIGAVFSGLIWNWKVYSHKCEALVSLFLVLLVNFGLGLLPYVDNFANIGGLISGFLLGFLLFFTLPITQVAKSKADLFNDSFKNHMKLKIKQKLNRPVLRSCSLLLFGLILAGCLVAVLCGINLSQYCKWCQHIDCIPSKIWNCQGNAFSCQTMVSNEQLTLTCLGNGNFRVFPFSNISQERVQDLCSMICS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 660964 663187 - Bpe007938.1 Bpe02g00087 98236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00087 389 PANTHER RHOMBOID-RELATED 11 388 IPR002610 GO:0004252|GO:0006508|GO:0016021
Bpe02g00087 389 SUPERFAMILY Rhomboid-like 49 260 IPR035952 -
Bpe02g00087 389 Pfam Rhomboid family 122 259 IPR022764 GO:0004252|GO:0016021
Bpe02g00087 389 Gene3D - 47 260 IPR035952 -
Bpe02g00087 389 PANTHER RHOMBOID-LIKE PROTEIN 8 11 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00087 - - - qlo:115972149 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00087 Bpe-Chr2:660964 Bpe04g01324 Bpe-Chr4:19824988 1.15E-81 dispersed
Bpe02g00087 Bpe-Chr2:660964 Bpe07g00122 Bpe-Chr7:877506 3.41E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g343 . . . . Bpe02g00087 . . Bma01g02631 Cmo05g00503 . . . . . . . . . . . . . . . Cla08g01086 Cam08g1538 Cec08g1112 Cco08g1239 Clacu08g1241 . Cre08g1022 . . . . . . . Cme03g01498 . . . . . . . . . . . . Cma05g00480 Car05g00428 . Cpe11g00420 . . . . . . . . . . . . . . . Lsi08g00943 . Chy03g01009 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012013 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00087 Bpe_Chr02 FPKM 4.851064 2.821731 1.441906 1.913217 0.968518 0.515776 1.252092 0.921815 0.858212 1.193198