Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00094 ATGGCGAAGAACTCAATCACGCTCCTCTTTGTCGTCGTTCTCATTTTCTGCATTTTATCTTCTTCCCATGGGAGAATCAGTCCAAGCCTTCGTATCAGAGCTGTAAACCTTGGAGGGTGGCTCGTCACTGAAGGCTGGATTAAACCTTCCCTCTTTGACGGAATACCCAACAAAGATTTCTTGGATGGAACCCAGCTTCAGTTTCTATCAGTGACCACTGGGAAATATCTTTGTGCTGAGTTAGGAGGAGGATCCATAATTGTAGCAAACCGGTCAGCGGCTTCAGGCTGGGAAACTTTTAAAGTCTGGAGAGTGAACGAGACCGCTTTCAATTTTAGAGTGTTTTTCAATCAGTTCATTGGGGTGGATATGACCGGCAACGGCGGACAGGTGGTTGCCGTTTCTACTGCACCAGGCAATTTAGAGACATTTCAGATCATGAGAAACTCCAACGATTTGAGCCGAGTCAAAATCAAAGCTTCTAACGGGTTGTTCTTGCAGGCTAAATCGGAGACCGTGGTTACAGCCGATTACGTCGGAATTGGCGGGTGGGGAGACGATGACCCATCAGTTTTCCTGATGAACTTCGCCGGAAAAATGGAAGGAGAATTTCAGGTCACTAATGGTTATGGAGCAGTCAAAGCTCCCCAAGTTATGAAGGATCATTGGAGGACATTCATAGTGGAAGATGACTTCAAGTTCATATCAGAGAACGGATTGAACGCCGTGAGAATTCCCGTTGGATGGTGGATAGCCAGCGATCCATCTCCTCCGCCTCCATACGTCGGTGGATCCTTGAAAGCTCTAGACGACGCCTTTTTATGGGCTCTAAAATATAGACTGCAAGTCATCGTCGACCTACACGCAGCTCCTGGTTCGCAAAATGGGTTCGAACACAGCTCCTCCAGAGATGGATCCCAAGAGTGGGGTAAAACAGACGATAACATTATGCAGACTGTTCGAGTGATCGACTTCTTGACTGCAAGATATGCAAAGAACCCGAGCCTATATGCAGTGGAGCTGATCAACGAGCCGTTGTCTCCGGGAGTTTCACTCGATCGGTTGACCAAGTACTATCAAGCCGGTTATGATGCGGTCCGAAAGTACACTTCGACGGCTTATGTCGTGTTGTCAAACCGGCTTGGACCGGCAGATGCAAGAGAGTTGTTTCCTCTGGCCAGTGGGATGACTGGTTCGGTGGTCGATGTCCACTACTATAACCTTTTCTCTGCTATCTTCAATGGCTGGACGGTGCAGCAAAACATTGACTACATTAACGTCAATAGAACCGCCGAGTTGAATTATGTAACTACTTCAAATGGCCCTCTCACTTTTGTCGGCGAGTGGGTGGCAGAGTGGCAAGTGAGTGGCGCGTCAAAGGAGGATTACCAAAGATATGCGAAGGCACAATTGGATGTTTACGGGAGAGCGAGTTTCGGGTGGGCTTATTGGACACTTAAAAATGTAAACAACCATTGGAGCATGGAGTGGATGATTCAAAATGGATATATTTCCCTGTAA 1521 47.4 MAKNSITLLFVVVLIFCILSSSHGRISPSLRIRAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTQLQFLSVTTGKYLCAELGGGSIIVANRSAASGWETFKVWRVNETAFNFRVFFNQFIGVDMTGNGGQVVAVSTAPGNLETFQIMRNSNDLSRVKIKASNGLFLQAKSETVVTADYVGIGGWGDDDPSVFLMNFAGKMEGEFQVTNGYGAVKAPQVMKDHWRTFIVEDDFKFISENGLNAVRIPVGWWIASDPSPPPPYVGGSLKALDDAFLWALKYRLQVIVDLHAAPGSQNGFEHSSSRDGSQEWGKTDDNIMQTVRVIDFLTARYAKNPSLYAVELINEPLSPGVSLDRLTKYYQAGYDAVRKYTSTAYVVLSNRLGPADARELFPLASGMTGSVVDVHYYNLFSAIFNGWTVQQNIDYINVNRTAELNYVTTSNGPLTFVGEWVAEWQVSGASKEDYQRYAKAQLDVYGRASFGWAYWTLKNVNNHWSMEWMIQNGYISL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 701504 704574 - Bpe007945.1 Bpe02g00094 98243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00094 506 PANTHER CELLULASE CONTAINING PROTEIN, EXPRESSED 11 506 - -
Bpe02g00094 506 PANTHER FASCIN 11 506 IPR010431 GO:0007015|GO:0051015
Bpe02g00094 506 Pfam Cellulase (glycosyl hydrolase family 5) 222 488 IPR001547 GO:0004553|GO:0071704
Bpe02g00094 506 Gene3D Glycosidases 180 506 - -
Bpe02g00094 506 SUPERFAMILY Actin-crosslinking proteins 64 184 IPR008999 -
Bpe02g00094 506 SUPERFAMILY (Trans)glycosidases 30 504 IPR017853 -
Bpe02g00094 506 Gene3D - 72 179 - -
Bpe02g00094 506 Gene3D Glycosidases 25 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00094 - - - mesc:110606142 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00094 Bpe-Chr2:701504 Bpe06g00088 Bpe-Chr6:1223277 7.79E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g378 . . . . Bpe02g00094 . . Bma01g02623 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1235 Cone20ag0489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015720 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00094 Bpe_Chr02 FPKM 12.961027 13.410772 12.68191 12.03217 10.694757 8.810764 10.982368 14.892409 14.80938 15.978152