Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00097 ATGGATTCTCGAGGACGAGTTTTATTTGATCTCAATGAACCTCCTGCCGAGGATAATGAAGTTAGTGACAGTGTTGTCTACCTGCCACAGAAGGCTATTCCTTCTTCAAATCCCCACTCATCGGATTTTTTTTCAGAGGTAGATGGTAATCATAAAATAGTAAATAATTTTACTTTTTCACATGCTTCTTCAGTCTCTGGGTTTCAGCCTTTTGTTCGAACAAAATCTGCTCATCACCCTGTTGTGGTTGAAGATCTTGAGAAAGTAGAGCGTCATTACTCTAAGATTGCATCATCATCCAATTCAAGTATGGATGAAAGGATGGCCGCATCATTCGTATCAGGTTCTAGAGAGGCTCAATGTGAGGACAGGGAAGAAGGAGAATGGTCTGATGTGGAGGGCTCGGCTGATGCATCTGCAGGAACTAGTTTGCAGACTCAGTCTAAAGGTGTGAAACAGCAAGAACTACTGTCTATATCCAGTGCGACTGTTGATACCAGTTCTTTAAATCCCCAAAACTCTGATTTTATAAGAGATGAAAGCGGTCTTCCTGTTTCGTTAGAATCAGAGATAGATCTCGTTGACCAAAAGAGCAATGGAAGCAGGACTGTGGAATGGAATGCTACAGGTGATATCCCAATGGATGACCAGGCAGAGCTAGTATATGCTAAAAAACAAAGAGAAGTTAAAGGTGTTGAAGCTACTCATGCACTTAAATGTGCTAATAATTCTGGTAAAAGAAAAGTAGATCAGCAACAGGAAGCTAAGCTTGGAAAGAAAAGAAGTAGACAGACTATGTTTCTTAATTTAGAGGATGTAAAGCAGGCTGGCCCTATGAAATCCTCAACTCCCAGGAGGCAGGCCATTCTGCCACCAATTATGACTCGTACAGTGAAAGAAATTCGTACTGCTGCTCCACTCACTGAACGAGCTGGTGAAAAACAGCAACTTCCTAACAAGGATCTCAAACAGGGCGATATATCATGTGATGAAGGAGGCAATCCATTGGAAACGGGAGAATTTAGATCTGATTCCAATGGTGATGGCAATTCAGGTCACGGAGCTAAGTCATGTAGGCTAAATGGGAATGGAGATTTTTCTGTAGACATTTCCCTGCCACCTATTCCTAGACAGGGTACGTGGAAACAACCAACAGATTCAAGACAGTTAAAGAATATACAGGTTAGTAATAGGAAACCAGCTCAAACAAGTCCAAATTTAATGGAAACAAAAGTAGTAACCAAGAAACATCTTCCTGCTAAAAAGCAAAGTGCTATTAATACACAATATCAGGACACATCAGTTGAAAGACTCATACGGGAGGTGACCAATGAGAAGTTTTGCCATAATCCAGGGGAGACCGAACTTCAATGTGTTCCTGGTCGATTTGAATCTGTAGAAGAATATGTTAGAGTGTTTGAACCTTTATTATTTGAAGAGTGCCGTGCTCAGCTTTACAGTACGTGGGAGGAATTAACTGAAACAGTATCGAGGGACACACATGTGGTGGTTCGCATAAAGAACATTGAAAGAAGAGAAAGAGGGTGGTATGATGTGATAGTCCTTCCGGTAAATGAGTGCAAGTGGTCTTTCAAGGAGGGTGATGTTGCGATTCTTTCATCCCCCAGGCCTGGACCAGTAAAGTCAAAGCGAAATAATACATCCTCAGTGGAAGAAAATGATGAGCTTGAATGTAGTGGACGTGTCGCTGGAACAGTTCGACGGCACATTCCTATTGATACTCGGGATCCTCCTGGTGCTATCCTTCATTTTTATGTTGGTGACTCTTATGATTCTAATAAAGTTGATGATGATCATTTATTAAAGAAACTTCATACCAAAGGTGTGTGGCATCTGGTAGTGCTTGGTTCCATTGCAACTACCCAGCGGGAGTACATTGCCCTGCACGCATTTCGTCGTTTGAATTCACAGATGCAAGCTTCAATCCTTCAACCCAGTCCAGAGCAATTTCCAAAGTATGAACAGCAGCCTCCTGCGATGCCAGAATGTTTCACTCAGAACTTTGTTGATCATTTACATAGGACCTTTAATGGGCCTCAGCTAGCAGCTATCCAATGGGCTGCTATGCATACAGCTGCTGGTACGAGTAGTGGAACAGCAAAAAGGCAAGATCCATGGCCGTTTACCCTTGTACAAGGTCCTCCAGGAACAGGTAAGACGCACACAGTCTGGGGAATGTTAAATGTCATCCATCTGGTACAATATCAGCACTATTACACTTCTTTGCTAAAAAAATTAGCTCCCGAAAGCTACAAGCAAGCTAATGAAAGCAGTTTAGACAATGTCATGATTGGATCAATAGATGAGGTACTTCAAAACATGGATCAGAATCTTTTCCGCACTCTTCCTAAGCTATGTCCAAAACCTAGAATGTTAGTTTGTGCACCTTCTAATGCTGCAACAGATGAGTTGCTAGCACGTGTTCTTAATCGTGGATTCATTGATGGCGAGATGAAAGTTTATCGACCTGATGTAGCTCGAGTTGGTGTCGACTCTCAAACTCGTGCTGCTCAAGCAGTTTCTGTAGAGAGGAGAACGGAACAACTTTTAATGAAAAATAGAGAGGAAATTTTAGGATGGATGCACCAGCTCAAAGCTCGCGAAGCTCAATTATCTCAGCAGATATCAATTCTTCAAAGAGAACTAAATGCTACTGCCGCTGCTATTCGTACTCAAGGATCTGTTATGGGCAATGCTAATGCTTTGGTGCAATCTGATGACTGGGCTGCATTGATCACTGATGCCAGAGGAAGAAACTGTTATATGAATATGGAATCCCTTCCAAAAGACTTTCTGGTATCCAATGGTCCTCCTGTTTACGCTGGATTGCCAAAGATCTCCTCAAATATGAGGGGTTTGAGGTCAACTGGGTCAAGACACAGGTCTTTAGACATGCACGTAGAGTCTGGGTCTGGAACTCCATCAGAAGATGATGAGAAGTCCAATTCATACTCTAGGAATGGAATCTGCCGTCCCTTAAAGCCACCTATTGAGAATTCCTCAGATGACTTTGATCAATCAAGTGATAGAACAAGAGATGCATGGCAATCTGGCACACAAAAGAAGCAAAGATCTGGAAATGGCGGAAATATTCGATAA 3120 42.21 MDSRGRVLFDLNEPPAEDNEVSDSVVYLPQKAIPSSNPHSSDFFSEVDGNHKIVNNFTFSHASSVSGFQPFVRTKSAHHPVVVEDLEKVERHYSKIASSSNSSMDERMAASFVSGSREAQCEDREEGEWSDVEGSADASAGTSLQTQSKGVKQQELLSISSATVDTSSLNPQNSDFIRDESGLPVSLESEIDLVDQKSNGSRTVEWNATGDIPMDDQAELVYAKKQREVKGVEATHALKCANNSGKRKVDQQQEAKLGKKRSRQTMFLNLEDVKQAGPMKSSTPRRQAILPPIMTRTVKEIRTAAPLTERAGEKQQLPNKDLKQGDISCDEGGNPLETGEFRSDSNGDGNSGHGAKSCRLNGNGDFSVDISLPPIPRQGTWKQPTDSRQLKNIQVSNRKPAQTSPNLMETKVVTKKHLPAKKQSAINTQYQDTSVERLIREVTNEKFCHNPGETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETVSRDTHVVVRIKNIERRERGWYDVIVLPVNECKWSFKEGDVAILSSPRPGPVKSKRNNTSSVEENDELECSGRVAGTVRRHIPIDTRDPPGAILHFYVGDSYDSNKVDDDHLLKKLHTKGVWHLVVLGSIATTQREYIALHAFRRLNSQMQASILQPSPEQFPKYEQQPPAMPECFTQNFVDHLHRTFNGPQLAAIQWAAMHTAAGTSSGTAKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQANESSLDNVMIGSIDEVLQNMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLARVLNRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLMKNREEILGWMHQLKAREAQLSQQISILQRELNATAAAIRTQGSVMGNANALVQSDDWAALITDARGRNCYMNMESLPKDFLVSNGPPVYAGLPKISSNMRGLRSTGSRHRSLDMHVESGSGTPSEDDEKSNSYSRNGICRPLKPPIENSSDDFDQSSDRTRDAWQSGTQKKQRSGNGGNIR 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 712902 724149 - Bpe007948.1 Bpe02g00097 98246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 136 152 - -
Bpe02g00097 1039 Gene3D - 618 897 IPR027417 -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 542 561 - -
Bpe02g00097 1039 Pfam AAA domain 689 901 IPR041677 GO:0004386
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 1018 1039 - -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 964 991 - -
Bpe02g00097 1039 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 1 902 - -
Bpe02g00097 1039 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 902 1005 - -
Bpe02g00097 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 823 IPR027417 -
Bpe02g00097 1039 PANTHER DNA2/NAM7 HELICASE FAMILY 1 902 IPR045055 -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 304 360 - -
Bpe02g00097 1039 Coils Coil 868 888 - -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 950 1039 - -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 1 21 - -
Bpe02g00097 1039 MobiDBLite consensus disorder prediction 112 152 - -
Bpe02g00097 1039 PANTHER DNA2/NAM7 HELICASE FAMILY 902 1005 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00097 - - K10706 cmos:111446131 1263.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00097 Bpe04g00455 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00097 Bpe-Chr2:712902 Bpe06g00827 Bpe-Chr6:18456337 1.22E-19 dispersed
Bpe02g00097 Bpe-Chr2:712902 Bpe04g00455 Bpe-Chr4:2914149 6.36E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00097 Bpe_Chr02 FPKM 0.228517 0.0 4.830389 4.626609 3.79959 3.955788 4.006421 0.460943 0.417392 0.214804