Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00100 ATGAATTCTAAGAATTCGCCCAAAGCTGCTAAAGTTTCAGCAGTAGAAACAGAGACCACACTGATCGTTGATAACCCAGCCGCCGATCAGCCAAAGCCACCTAGTTCTCAACAAAACTATCAAGCTCGACGGCTTTCCGATGCCGCAGCTAGAACCTCAACATCATCATCCTCCACTATTTCCAGCCAAGCTAAGGCGAGTCATCCCAAATCTCCGGTTCTTGGTCACATAGGTAACTTGCGAATGGCCGGAAATGGCAGTCTATCGGCAGGCAATACTCCCAAAGCCTCAAATAAAGAAAAAATTACCTCTCTCTCTCAAATTAGTGGGAGTGGAAACATGGGCAACATTTTTAGACAATTTCATGGTCTTCGAAGTAAAATTGACCCAGACACTTTAAAATCCATGGGAAACGAGGCTTACAATATGGGTAGATTCGAGGAGGCTTTCAATTTGTATGACCGAGCTACAGCTTTGGACCCTGACAACGTCGTCTATCACTGCAACAAAAGTGCCGCTCTAATGAGCTTAGACCGGCTAGCTGAGGCCGTTGACGAATGCCGGCTGGCCATTCGGATTCAACCTTCTCATTGCAGAGCTCATCACCGATTAGCAACGTTGTACCTCAGACTGGGAGAAACAGAAAAAGCATTATATCACTTCGGAGAATCTGGCAATCGTGGTGAAAATAAAGACATTAACGAAGCGTATGCTCTTCAGAATTGCCTGTCCAGGTGCTCTGAAGCTAGACAATCACAATCATGGAAAATTCTGCTGAAAGAGACGCAGCTAGCAATCTCCATGGGAGCCAAATCATCTTATAAGGTGTATGTCCTGCAATCGGAGGCGTTACTTAGGCTTCGAAGGCATCAAGAGGCTTACGCAGCCTCCGAGCGGGGTCGAAATCTGAGAAATGAGTTCGCCAAGGTGATCGACATTTGCGACAAAGCTTACCCTTTAATGATCGAAGCTCAGATTTACTCGACAATGGGAAGAACTCTGAAGAATGTCAAGAATCATTATCATTTAAGAACTTTCGCCGTGTTGGAGAGGTGGGAGGCTTCGATTCAGGACTACGAAGTGCTGATAAGAGAGATGCCTGCCAATGAGGAGGTGGGAAGGGGTTTGTTTGAAGTAAAACTGCAGCTCAAGAAACAGAGAGGGGAAGATGTTAAAGACATGAAATTTGGCTCCAATTTGCTGTCTATTTCTAGCAATGACCGTTTCAGGCACTTCATCACATCTCCTGGGATGACGGTGGCTCTTTTCTGCCAAAAAAGGACCCATAAAAAAGAGTTGCAGGTCATGGAGAAAGTCTGCCGTAGATTCCCATCGGTAAACTTCCTCCAGGTAGAGATAGAAGACCATCCCTTCCTAGCAAAATCAGAGGGAGTGAGTTCAATTCCAGCCTTCAAAATATACAAGAACGGATCAAGCGTCCGCGAATTTTCTGCCGCAGGCCCAGAATCGCTAGAAAGCACCGTCAGATTGTTTAGCAGTTGA 1503 45.84 MNSKNSPKAAKVSAVETETTLIVDNPAADQPKPPSSQQNYQARRLSDAAARTSTSSSSTISSQAKASHPKSPVLGHIGNLRMAGNGSLSAGNTPKASNKEKITSLSQISGSGNMGNIFRQFHGLRSKIDPDTLKSMGNEAYNMGRFEEAFNLYDRATALDPDNVVYHCNKSAALMSLDRLAEAVDECRLAIRIQPSHCRAHHRLATLYLRLGETEKALYHFGESGNRGENKDINEAYALQNCLSRCSEARQSQSWKILLKETQLAISMGAKSSYKVYVLQSEALLRLRRHQEAYAASERGRNLRNEFAKVIDICDKAYPLMIEAQIYSTMGRTLKNVKNHYHLRTFAVLERWEASIQDYEVLIREMPANEEVGRGLFEVKLQLKKQRGEDVKDMKFGSNLLSISSNDRFRHFITSPGMTVALFCQKRTHKKELQVMEKVCRRFPSVNFLQVEIEDHPFLAKSEGVSSIPAFKIYKNGSSVREFSAAGPESLESTVRLFSS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 739891 742162 - Bpe007951.1 Bpe02g00100 98249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00100 500 Gene3D Tetratricopeptide repeat domain 129 340 IPR011990 GO:0005515
Bpe02g00100 500 Gene3D Glutaredoxin 393 499 - -
Bpe02g00100 500 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 36 333 IPR044534 -
Bpe02g00100 500 SUPERFAMILY TPR-like 130 372 IPR011990 GO:0005515
Bpe02g00100 500 Pfam Thioredoxin 435 495 IPR013766 -
Bpe02g00100 500 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 346 498 - -
Bpe02g00100 500 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Bpe02g00100 500 MobiDBLite consensus disorder prediction 85 100 - -
Bpe02g00100 500 SUPERFAMILY Thioredoxin-like 355 493 IPR036249 -
Bpe02g00100 500 CDD TRX_family 409 490 - -
Bpe02g00100 500 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 36 333 - -
Bpe02g00100 500 Pfam TPR repeat 137 173 - -
Bpe02g00100 500 SMART tpr_5 274 307 IPR019734 GO:0005515
Bpe02g00100 500 SMART tpr_5 198 231 IPR019734 GO:0005515
Bpe02g00100 500 SMART tpr_5 164 197 IPR019734 GO:0005515
Bpe02g00100 500 SMART tpr_5 130 163 IPR019734 GO:0005515
Bpe02g00100 500 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 346 498 IPR044534 -
Bpe02g00100 500 MobiDBLite consensus disorder prediction 1 100 - -
Bpe02g00100 500 MobiDBLite consensus disorder prediction 1 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00100 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 278.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00100 Bpe04g00451 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00100 Bpe-Chr2:739891 Bpe06g00073 Bpe-Chr6:929587 1.62E-06 dispersed
Bpe02g00100 Bpe-Chr2:739891 Bpe04g00451 Bpe-Chr4:2896787 1.20E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g13 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g00100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00100 Bpe_Chr02 FPKM 21.322733 21.939133 0.659147 0.280788 1.169442 0.797934 0.615468 0.168217 0.101117 0.074226