Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00110 GCTAAAACCTTGCAAATCAACATTCATCATCCCAAGGAACCATTCGAGATGGACAAAATGAAGTCAATTACATTCGGTGTGGCGGTTCCTTTCTTTGTTGAGAAGAATTCAAAACTCAATGTCAAAGTGAGCAGCCATGAGAGTCCAGTTGAAGATGCGGCTGAGGTAGCATACGAAGGGGAAGATGAGCATGAAGAAAACTCAATGAAACGGGACTTTTCGGATTTCGATCTTCAAGCCCAGGTCAACTACGTAGAAGAATTTGATTCAGGGAACATACTTGATGAAATTGTTGGCCAAGATGTTGAAAGAAGTGCGGAAGTGATCCAAAGCGGACATCTTAGCGACCCTGGAGTTGGGAAGACACAGTTGTGGGGGTCTCCAAAGCTTAAGCGCTCATGCTCTAATTTAGAAACAAGAGACATGCTAAGAAATATTGCTTCTGATTTCCCACCTCCTTCAAAGTCGCAGTCTTTTGAAGACCTGCAACAAATAGCTCAGGGAGTGGAAAAGTATGTTGATGCTGGTAGTCCAGCTTCGATATTGACACGCCACAGTGCTGATAGGGTAATGTTGAAGAAACGATCATCAAGCCAAATTCTCCCTTCCAGAAGTAGAAGGTTGTGGTGGAAGTTATTCCTTTGGAGCCACAGAAACCTGCACAAACCATGGATAACAAAAACACAGCCACCACCTGTGAAGGTTGCTTTCAACCAGCAAGGTGGGTACTGTTCAGATACACTAGAACCAAAACAAGATATGGGATTGAACAAGATAGGATCACCTGGATCATTTACAGAAGACTCATGCCAGAACAATAACAGAAGTGACAATCAGAATTGGAACAGTTTTCATAATGGCGTCTCAGGTTTTTGGCCCCAGAATCAATGGGTTGCTTTTTCAACAGAATCATCGTCCTTGGAAAGAGTAAATGAATGGATGAAAGATCTTCAAACCCAGCCCCAACTCTCACTTGATGATGACAACATCGATGAAAGCATCTCTACAACATCACCTAAGGTGGGAAAATCACCAGATAGAGCCTTCACACATTTGAGTTGGCGTCCTGGTGGCGGTCCAGATACCAACCTGGCAGAAGAGATTATGTACGCAAATAATGTCGTCCAATCTCTGAACACTTCATCAACTGTGGCTCACATCTCTGGAATTGGTTTAAGGGCTATTCCCATGATCTCACATTTCTCAAGTCTTCGATCTGTCAACTTATCAGGCAATTTCATAGTTCACATTCCTCCAGGATCATTGCCTAAAGGTCTGCATACTCTTAACTTGGCTAGAAACAAGATCAACACCATTGAAGGTCTCAGGGAATTAACAAGGCTGAGGATACTTGACCTTAGTTACAATCGTATTTCTCGAATTGGACATGGACTGTCAAATTGTACTGTGATCAAGGAGCTATATCTCACAGCCAACAAGGTTAGTGATGTTGAAGGGCTGCATAGACTCCTGAAACTGACAGTTTTGGACCTGAGCTTCAACAAAATAACTACAACAAAATCTTTAGGCCAGCTCGTTGCAAACTACAACTCATTGCTAGCTCTTAATTTATTGGGTAATCCAATCCAAAACAATGTTAGCGAAGACCAGTTGCGGAAGTCAGTGTGTGGTTTGCTTCCAAATTTAGTTTACCTGAACAAACAGCCCATCAAAAATCAGAGAGCACGCGAAGCGCGAAGCAATGTTGTTGCCAAAGCTGCGCTAGCAAATACTGGATGGAGTTCTCGTAGAAAATCATCCAAAAAATTGGGCCAAGGTGGATCGTGTTCAACTAGTGGGCACAGAAGTACAGCCAGTGTTGCACAGAAAGTCAAAAACAAGTCAAAAGGCCAGACCCATCGCTACGTGACCCCTAGGGCACCGTCATCTGCTTTTGCCTCTTCTTCCCATTAG 1914 43.31 AKTLQINIHHPKEPFEMDKMKSITFGVAVPFFVEKNSKLNVKVSSHESPVEDAAEVAYEGEDEHEENSMKRDFSDFDLQAQVNYVEEFDSGNILDEIVGQDVERSAEVIQSGHLSDPGVGKTQLWGSPKLKRSCSNLETRDMLRNIASDFPPPSKSQSFEDLQQIAQGVEKYVDAGSPASILTRHSADRVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLHKPWITKTQPPPVKVAFNQQGGYCSDTLEPKQDMGLNKIGSPGSFTEDSCQNNNRSDNQNWNSFHNGVSGFWPQNQWVAFSTESSSLERVNEWMKDLQTQPQLSLDDDNIDESISTTSPKVGKSPDRAFTHLSWRPGGGPDTNLAEEIMYANNVVQSLNTSSTVAHISGIGLRAIPMISHFSSLRSVNLSGNFIVHIPPGSLPKGLHTLNLARNKINTIEGLRELTRLRILDLSYNRISRIGHGLSNCTVIKELYLTANKVSDVEGLHRLLKLTVLDLSFNKITTTKSLGQLVANYNSLLALNLLGNPIQNNVSEDQLRKSVCGLLPNLVYLNKQPIKNQRAREARSNVVAKAALANTGWSSRRKSSKKLGQGGSCSTSGHRSTASVAQKVKNKSKGQTHRYVTPRAPSSAFASSSH 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 803744 805833 + Bpe007960.1 Bpe02g00110 98259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00110 637 Gene3D Ribonuclease Inhibitor 257 463 IPR032675 -
Bpe02g00110 637 SMART LRR_typ_2 490 512 IPR003591 -
Bpe02g00110 637 SMART LRR_typ_2 445 468 IPR003591 -
Bpe02g00110 637 SMART LRR_typ_2 401 424 IPR003591 -
Bpe02g00110 637 ProSiteProfiles Leucine-rich repeat profile. 492 513 IPR001611 GO:0005515
Bpe02g00110 637 Gene3D Ribonuclease Inhibitor 464 563 IPR032675 -
Bpe02g00110 637 ProSiteProfiles Leucine-rich repeat profile. 425 446 IPR001611 GO:0005515
Bpe02g00110 637 SMART LRR_sd22_2 423 444 - -
Bpe02g00110 637 SMART LRR_sd22_2 445 467 - -
Bpe02g00110 637 SMART LRR_sd22_2 490 511 - -
Bpe02g00110 637 SMART LRR_sd22_2 468 489 - -
Bpe02g00110 637 PANTHER NISCHARIN RELATED 3 620 - -
Bpe02g00110 637 MobiDBLite consensus disorder prediction 326 347 - -
Bpe02g00110 637 MobiDBLite consensus disorder prediction 580 613 - -
Bpe02g00110 637 MobiDBLite consensus disorder prediction 580 637 - -
Bpe02g00110 637 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 620 - -
Bpe02g00110 637 MobiDBLite consensus disorder prediction 326 343 - -
Bpe02g00110 637 ProSiteProfiles Leucine-rich repeat profile. 447 469 IPR001611 GO:0005515
Bpe02g00110 637 Pfam Leucine rich repeat 403 458 IPR001611 GO:0005515
Bpe02g00110 637 MobiDBLite consensus disorder prediction 620 637 - -
Bpe02g00110 637 SUPERFAMILY Outer arm dynein light chain 1 394 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00110 - - - tcc:18592143 781.171
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00110 Bpe04g00445 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00110 Bpe-Chr2:803744 Bpe02g02237 Bpe-Chr2:23361227 1.02E-09 dispersed
Bpe11g00869 Bpe-Chr11:6413549 Bpe02g00110 Bpe-Chr2:803744 1.83E-07 transposed
Bpe13g00380 Bpe-Chr13:11558441 Bpe02g00110 Bpe-Chr2:803744 4.64E-07 transposed
Bpe15g00702 Bpe-Chr15:17605439 Bpe02g00110 Bpe-Chr2:803744 8.44E-72 transposed
Bpe02g00110 Bpe-Chr2:803744 Bpe04g00445 Bpe-Chr4:2861828 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00110 Bpe_Chr02 FPKM 0.942141 1.852173 0.069935 0.336754 2.944315 3.455387 2.769169 0.016101 0.0 0.0