Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00128 TCCATGGCTTTGAAACATAGAAAGCTTTACCCATCTTTCACTGCAACAAACGACACCAAAACCTGCTCAGAATATTGCTATCCAGCCTGCTCTTATGCCTGCTTTCCAGTCTTCAACTACCTCCCGCCGCCACTTCCTCCACCACGCTTCGACTCCAGCCAACCCCGCGATTCCTTTATTTTACAGACAGCCGTCATCATTTCCGTCGTTTTCCTCTTCTTCCTAGTCTTTATCTTCGTAGCCAAGGCCTGCATGAAACAGACGCCGGGTCCGCAGTCGCCGGAAAGAGCCATAGAGACCGAGGAAGAGGGGATTCTGAACGAGGTTAGGGTGGATAACCCTATCTGGTACATCTCCACTATTGGGCTGCAACAGTCTGTAATCAACTCCATTTCTATCTGTAAATACAAGAAGAATGAAGGGCTAGTCGACGGGACTGACTGTTCTGTTTGTTTAAGCGAGTTTCAAGAAAATGAAACTCTAAGGTTGTTGCCCAAGTGTGGCCATGCTTTTCATACTTCTTGTATCGACACTTGGTTGAGATCTCACACAAATTGTCCTCTTTGTCGATCAATCATAGTCACTGATTCCGTAGTGGGTTCGGAAACTATGATCAGAGCTTTGATGGAGAGAGAGAATAATGGCGATCCGCGCTCTAACGAAGAGACCCAGTTGGAAAATTCAGAGAGTAACCGCGAATCAGGCCATAACTCGGAAGTTACAGACAATGAAGACGAAACGAGAACGACCCACGATGGCGATGAAAGAATTTCAAAGGAAGAAGATGATGGGAAAGAACGAGTAAGAAAGACGAAGGTTTCAATGGATTCTTCATCGTCTGAAAGTTTCGAGGTTTAG 858 45.92 SMALKHRKLYPSFTATNDTKTCSEYCYPACSYACFPVFNYLPPPLPPPRFDSSQPRDSFILQTAVIISVVFLFFLVFIFVAKACMKQTPGPQSPERAIETEEEGILNEVRVDNPIWYISTIGLQQSVINSISICKYKKNEGLVDGTDCSVCLSEFQENETLRLLPKCGHAFHTSCIDTWLRSHTNCPLCRSIIVTDSVVGSETMIRALMERENNGDPRSNEETQLENSESNRESGHNSEVTDNEDETRTTHDGDERISKEEDDGKERVRKTKVSMDSSSSESFEV 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 874284 875141 + Bpe007978.1 Bpe02g00128 98277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00128 285 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Bpe02g00128 285 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 277 - -
Bpe02g00128 285 SUPERFAMILY RING/U-box 139 196 - -
Bpe02g00128 285 MobiDBLite consensus disorder prediction 210 274 - -
Bpe02g00128 285 CDD RING-H2_PA-TM-RING 147 190 - -
Bpe02g00128 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Bpe02g00128 285 MobiDBLite consensus disorder prediction 210 285 - -
Bpe02g00128 285 Pfam Ring finger domain 147 190 IPR001841 -
Bpe02g00128 285 SMART ring_2 148 189 IPR001841 -
Bpe02g00128 285 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 277 IPR044675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00128 - - - pop:7461803 234.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00128 Bpe-Chr2:874284 Bpe11g00330 Bpe-Chr11:2408078 3.24E-42 dispersed
Bpe05g00774 Bpe-Chr5:21084307 Bpe02g00128 Bpe-Chr2:874284 2.47E-19 dispersed
Bpe02g00128 Bpe-Chr2:874284 Bpe11g01761 Bpe-Chr11:13993075 6.67E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00128 Bpe_Chr02 FPKM 7.94353 9.533958 8.016494 10.974846 8.699051 7.651152 11.156108 5.867001 8.596485 9.711248