Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00135 ATGGCACCTAGTTTTGACTGTGTAGCTTCAAGCCTTTTGTGTGCGGAAGATAACATTTTTGACGACTATACGACGATCGAGGACGAGTACGAGAAAAATGGGTGGAACGATGAAAATGGGCCAACCCAGTTCAAGAAACGAAGTTTTGAAGGCGGAGAAAGGCCGCCATTGATGAGCGATGAGTGTATAGCTCTGCTGGTCGAGAAGGAACTCCACTATTTACCTGAAGGTAATTACTTGAAGAGGCTGGAAAGTGGGGATTTGGATTTGGGGGCTAGAAAAGAGGCTGTTGAATGGATTCAGAAGGGTAGTGCTAGCTTCAATTTCGGACCTCTCTGTACATACCTGGCCATAAGCTGCTTGGATCGATTTCTCTCCACCTATGATCTGCCTAAAGGCAAAGCTTGGACGATGCATTTGGTATCGGTGGCATGTCTATCTCTCGCAGCCAAACTAGAGGAGACCGAAGTTCCTCTTTCCCTCGATTTACAGGTTGGTGTATCAAAATTTGTTTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTTTTGAGCACATTAAATTGGAGAATGCAGACTATTACCCCTTTTTCCTTCATAGACTTTTTCTTGTTCAAGATTGGGGATGATCGAATGCCTTTTAGTCTTTCGTTGAGCAAAGCCTCTCGGTTGATACTACGCACAGTTGAAGATTCTTATTTTTTGGAATTCCGACCGTCGGAAATCGCATTGGCTGTGGCCATATCTGTTGCCGGAGAAATCCAGGCCATTGATACCGACAAAGCAATTTCTAGTCTCACCCACCAAGAGAAAGTGTTGGATTGTGTTAGAATGATCCAGGAAGTGTTATTAAAGAATGAGTCTGAAAATGATTCAAGAGCTTATGTTCAATCTTTTCCCTCTAGTCCGAGCGGGGTGTTGGATGTTCTGTGCTTTAGCTCGACGAGTGACGGGTCTGATCAGAGTTCGTCTGGCAATAGTCGAGATCATAAGCGGAGGAATCGAATTCAAAACTGTAAATTGGAGCCATAG 1035 43.86 MAPSFDCVASSLLCAEDNIFDDYTTIEDEYEKNGWNDENGPTQFKKRSFEGGERPPLMSDECIALLVEKELHYLPEGNYLKRLESGDLDLGARKEAVEWIQKGSASFNFGPLCTYLAISCLDRFLSTYDLPKGKAWTMHLVSVACLSLAAKLEETEVPLSLDLQVGVSKFVFEAKTIQRMELLVLSTLNWRMQTITPFSFIDFFLFKIGDDRMPFSLSLSKASRLILRTVEDSYFLEFRPSEIALAVAISVAGEIQAIDTDKAISSLTHQEKVLDCVRMIQEVLLKNESENDSRAYVQSFPSSPSGVLDVLCFSSTSDGSDQSSSGNSRDHKRRNRIQNCKLEP 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 931022 932797 - Bpe007985.1 Bpe02g00135 98284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00135 344 SUPERFAMILY Cyclin-like 177 288 IPR036915 -
Bpe02g00135 344 Gene3D - 66 282 - -
Bpe02g00135 344 Gene3D - 76 193 - -
Bpe02g00135 344 SUPERFAMILY Cyclin-like 57 192 IPR036915 -
Bpe02g00135 344 CDD CYCLIN 93 185 IPR013763 -
Bpe02g00135 344 Pfam Cyclin, N-terminal domain 62 192 IPR006671 -
Bpe02g00135 344 Pfam Cyclin, C-terminal domain 195 297 IPR004367 -
Bpe02g00135 344 MobiDBLite consensus disorder prediction 317 344 - -
Bpe02g00135 344 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 337 - -
Bpe02g00135 344 SMART Cyclin_C_2 195 316 IPR004367 -
Bpe02g00135 344 MobiDBLite consensus disorder prediction 325 344 - -
Bpe02g00135 344 PANTHER CYCLINS 1 337 IPR039361 -
Bpe02g00135 344 SMART cyclin_7 98 186 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00135 K18810 CYCD1_2_4; cyclin D1/2/4, plant - zju:107411149 367.466
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00135 Bpe14g00477 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00135 Bpe-Chr2:931022 Bpe06g00097 Bpe-Chr6:1430128 9.23E-89 dispersed
Bpe07g00579 Bpe-Chr7:12284963 Bpe02g00135 Bpe-Chr2:931022 2.27E-38 dispersed
Bpe12g00234 Bpe-Chr12:2046983 Bpe02g00135 Bpe-Chr2:931022 8.32E-37 dispersed
Bpe14g00684 Bpe-Chr14:5400859 Bpe02g00135 Bpe-Chr2:931022 1.84E-40 dispersed
Bpe15g00320 Bpe-Chr15:14741470 Bpe02g00135 Bpe-Chr2:931022 1.85E-47 dispersed
Bpe02g00451 Bpe-Chr2:2953559 Bpe02g00135 Bpe-Chr2:931022 2.05E-39 transposed
Bpe14g00477 Bpe-Chr14:4237740 Bpe02g00135 Bpe-Chr2:931022 1.09E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g483 . . . . Bpe02g00135 . . Bma01g02590 Cmo05g00557 . . . . . . . . . . . . . . . Cla08g01149 Cam08g1609 Cec08g1180 Cco08g1306 Clacu08g1308 . Cre08g1092 Cone4ag1308 Cone7ag0848 Cone17ag1189 Cone20ag0545 . . . Cme03g01823 Blo17g00102 . Bda11g00791 Bda13g01369 . Bpe14g00477 . Bma02g00120 . . . . Cma05g00530 Car05g00478 . Cpe11g00467 . . . . . . . . . . . . . . . Lsi08g01007 Csa02g02191 Chy03g01325 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004407 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00135 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0