Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00145 ATGTTCGGGCATTCCCAGCCCTTGAACTTGGCTAATCAGATTCCATCGGTTCCTGACGACGAAGAAGACGGCGCAGCCACAGACGGAATGGATAACACCCACATGCGCTTCGATTCTCACGCCTTAAAAGACGGTGCCGGGGCTGTCGGTGAGGATGTCGTATCCGACGGTTTGTACGTTTCTTCTGCTGGAGGGATGGAATTGGCGGCTCAACGTGGCGATGGTACGAGTCAGCTCTCGCTTTCATTTCGTGGCCAAGTTTATGTTTTTGACGCCATCACACCTGAGAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAGCAAGGTGTGGAGATGACACATCAGAATCTAAGGAGTGTGATGGACTTCCCAAGGCGCTGTAGTCAACCACAGAGAGCTGCATCATTAAATAGATTCAGGCAGAAAAGAAATGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGAAACAAGGGACAGTTTACTTCTGCTAAGAGGCCTGATAGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCTGAAACTTTATGCACACATTGTGGCACAAGCTCAAAAGGTACACCTATGATGCGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAACGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACAATCCTCTGTCCTTTCCAGAGCAGGTAGACTCTCCGGCAGGCTAG 804 49.38 MFGHSQPLNLANQIPSVPDDEEDGAATDGMDNTHMRFDSHALKDGAGAVGEDVVSDGLYVSSAGGMELAAQRGDGTSQLSLSFRGQVYVFDAITPEKVQAVLLLLGGYELSTTQQGVEMTHQNLRSVMDFPRRCSQPQRAASLNRFRQKRNERCFDKKVRYSVRQEVALRMQRNKGQFTSAKRPDRTHSWDTVQGLGQVESHAETLCTHCGTSSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNPLSFPEQVDSPAG 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 998149 1001178 + Bpe007995.1 Bpe02g00145 98294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00145 267 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bpe02g00145 267 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 252 - -
Bpe02g00145 267 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 ProSiteProfiles GATA-type zinc finger domain profile. 201 252 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bpe02g00145 267 MobiDBLite consensus disorder prediction 1 28 - -
Bpe02g00145 267 Gene3D - 198 255 IPR013088 GO:0006355|GO:0008270
Bpe02g00145 267 PANTHER GATA TRANSCRIPTION FACTOR 28 18 265 IPR045280 GO:0006355
Bpe02g00145 267 PANTHER GATA TRANSCRIPTION FACTOR 25 18 265 - -
Bpe02g00145 267 SMART tify_2 72 107 IPR010399 -
Bpe02g00145 267 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bpe02g00145 267 MobiDBLite consensus disorder prediction 248 267 - -
Bpe02g00145 267 CDD ZnF_GATA 207 254 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 Pfam tify domain 75 106 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00145 - - - pdul:117619919 345.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00145 Bpe-Chr2:998149 Bpe14g00482 Bpe-Chr14:4304540 1.54E-69 dispersed
Bpe02g00145 Bpe-Chr2:998149 Bpe02g00146 Bpe-Chr2:1002727 2.34E-64 tandem
Bpe07g00312 Bpe-Chr7:2282903 Bpe02g00145 Bpe-Chr2:998149 4.09E-85 transposed
Bpe02g00145 Bpe-Chr2:998149 Bpe04g00413 Bpe-Chr4:2603195 1.92E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe05g00883 BCT 1 184 Tify Gene Family AT4G14720 53.1 3.4e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20841 PF06203 CCT 1.50E-15 CL0281 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00145 Bpe_Chr02 FPKM 1.446721 1.345543 1.208579 1.217543 4.329461 4.349848 4.715217 0.860226 0.756621 0.847295