Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00145 ATGTTCGGGCATTCCCAGCCCTTGAACTTGGCTAATCAGATTCCATCGGTTCCTGACGACGAAGAAGACGGCGCAGCCACAGACGGAATGGATAACACCCACATGCGCTTCGATTCTCACGCCTTAAAAGACGGTGCCGGGGCTGTCGGTGAGGATGTCGTATCCGACGGTTTGTACGTTTCTTCTGCTGGAGGGATGGAATTGGCGGCTCAACGTGGCGATGGTACGAGTCAGCTCTCGCTTTCATTTCGTGGCCAAGTTTATGTTTTTGACGCCATCACACCTGAGAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAGCAAGGTGTGGAGATGACACATCAGAATCTAAGGAGTGTGATGGACTTCCCAAGGCGCTGTAGTCAACCACAGAGAGCTGCATCATTAAATAGATTCAGGCAGAAAAGAAATGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGAAACAAGGGACAGTTTACTTCTGCTAAGAGGCCTGATAGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCTGAAACTTTATGCACACATTGTGGCACAAGCTCAAAAGGTACACCTATGATGCGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAACGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACAATCCTCTGTCCTTTCCAGAGCAGGTAGACTCTCCGGCAGGCTAG 804 49.38 MFGHSQPLNLANQIPSVPDDEEDGAATDGMDNTHMRFDSHALKDGAGAVGEDVVSDGLYVSSAGGMELAAQRGDGTSQLSLSFRGQVYVFDAITPEKVQAVLLLLGGYELSTTQQGVEMTHQNLRSVMDFPRRCSQPQRAASLNRFRQKRNERCFDKKVRYSVRQEVALRMQRNKGQFTSAKRPDRTHSWDTVQGLGQVESHAETLCTHCGTSSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNPLSFPEQVDSPAG 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 998149 1001178 + Bpe007995.1 Bpe02g00145 98294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00145 267 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bpe02g00145 267 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 252 - -
Bpe02g00145 267 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 ProSiteProfiles GATA-type zinc finger domain profile. 201 252 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bpe02g00145 267 MobiDBLite consensus disorder prediction 1 28 - -
Bpe02g00145 267 Gene3D - 198 255 IPR013088 GO:0006355|GO:0008270
Bpe02g00145 267 PANTHER GATA TRANSCRIPTION FACTOR 28 18 265 IPR045280 GO:0006355
Bpe02g00145 267 PANTHER GATA TRANSCRIPTION FACTOR 25 18 265 - -
Bpe02g00145 267 SMART tify_2 72 107 IPR010399 -
Bpe02g00145 267 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bpe02g00145 267 MobiDBLite consensus disorder prediction 248 267 - -
Bpe02g00145 267 CDD ZnF_GATA 207 254 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bpe02g00145 267 Pfam tify domain 75 106 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00145 Bpe-Chr2:998149 Bpe14g00482 Bpe-Chr14:4304540 1.54E-69 dispersed
Bpe02g00145 Bpe-Chr2:998149 Bpe02g00146 Bpe-Chr2:1002727 2.34E-64 tandem
Bpe07g00312 Bpe-Chr7:2282903 Bpe02g00145 Bpe-Chr2:998149 4.09E-85 transposed
Bpe02g00145 Bpe-Chr2:998149 Bpe04g00413 Bpe-Chr4:2603195 1.92E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20841 PF06203 CCT 1.50E-15 CL0281 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00145 - - pdul:117619919 345.125