Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe02g00145 | ATGTTCGGGCATTCCCAGCCCTTGAACTTGGCTAATCAGATTCCATCGGTTCCTGACGACGAAGAAGACGGCGCAGCCACAGACGGAATGGATAACACCCACATGCGCTTCGATTCTCACGCCTTAAAAGACGGTGCCGGGGCTGTCGGTGAGGATGTCGTATCCGACGGTTTGTACGTTTCTTCTGCTGGAGGGATGGAATTGGCGGCTCAACGTGGCGATGGTACGAGTCAGCTCTCGCTTTCATTTCGTGGCCAAGTTTATGTTTTTGACGCCATCACACCTGAGAAGGTTCAAGCAGTATTATTACTGTTGGGGGGATACGAGCTCTCTACGACTCAGCAAGGTGTGGAGATGACACATCAGAATCTAAGGAGTGTGATGGACTTCCCAAGGCGCTGTAGTCAACCACAGAGAGCTGCATCATTAAATAGATTCAGGCAGAAAAGAAATGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGTCAGGAAGTTGCCCTCAGGATGCAACGAAACAAGGGACAGTTTACTTCTGCTAAGAGGCCTGATAGAACTCATAGCTGGGATACTGTCCAAGGGTTGGGGCAAGTTGAAAGCCATGCTGAAACTTTATGCACACATTGTGGCACAAGCTCAAAAGGTACACCTATGATGCGGCGAGGTCCATCTGGACCAAGGTCTCTCTGCAACGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACAATCCTCTGTCCTTTCCAGAGCAGGTAGACTCTCCGGCAGGCTAG | 804 | 49.38 | MFGHSQPLNLANQIPSVPDDEEDGAATDGMDNTHMRFDSHALKDGAGAVGEDVVSDGLYVSSAGGMELAAQRGDGTSQLSLSFRGQVYVFDAITPEKVQAVLLLLGGYELSTTQQGVEMTHQNLRSVMDFPRRCSQPQRAASLNRFRQKRNERCFDKKVRYSVRQEVALRMQRNKGQFTSAKRPDRTHSWDTVQGLGQVESHAETLCTHCGTSSKGTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNPLSFPEQVDSPAG | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 998149 | 1001178 | + | Bpe007995.1 | Bpe02g00145 | 98294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe02g00145 | 267 | ProSiteProfiles | Tify domain profile. | 72 | 107 | IPR010399 | - | |
Bpe02g00145 | 267 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 198 | 252 | - | - | |
Bpe02g00145 | 267 | Pfam | GATA zinc finger | 207 | 243 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe02g00145 | 267 | ProSiteProfiles | GATA-type zinc finger domain profile. | 201 | 252 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe02g00145 | 267 | Pfam | CCT motif | 139 | 181 | IPR010402 | GO:0005515 | |
Bpe02g00145 | 267 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Bpe02g00145 | 267 | Gene3D | - | 198 | 255 | IPR013088 | GO:0006355|GO:0008270 | |
Bpe02g00145 | 267 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 18 | 265 | IPR045280 | GO:0006355 | |
Bpe02g00145 | 267 | PANTHER | GATA TRANSCRIPTION FACTOR 25 | 18 | 265 | - | - | |
Bpe02g00145 | 267 | SMART | tify_2 | 72 | 107 | IPR010399 | - | |
Bpe02g00145 | 267 | ProSiteProfiles | CCT domain profile. | 139 | 181 | IPR010402 | GO:0005515 | |
Bpe02g00145 | 267 | MobiDBLite | consensus disorder prediction | 248 | 267 | - | - | |
Bpe02g00145 | 267 | CDD | ZnF_GATA | 207 | 254 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe02g00145 | 267 | ProSitePatterns | GATA-type zinc finger domain. | 207 | 234 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe02g00145 | 267 | SMART | GATA_3 | 201 | 254 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe02g00145 | 267 | Pfam | tify domain | 75 | 106 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00145 | Bpe-Chr2:998149 | Bpe14g00482 | Bpe-Chr14:4304540 | 1.54E-69 | dispersed | |
Bpe02g00145 | Bpe-Chr2:998149 | Bpe02g00146 | Bpe-Chr2:1002727 | 2.34E-64 | tandem | |
Bpe07g00312 | Bpe-Chr7:2282903 | Bpe02g00145 | Bpe-Chr2:998149 | 4.09E-85 | transposed | |
Bpe02g00145 | Bpe-Chr2:998149 | Bpe04g00413 | Bpe-Chr4:2603195 | 1.92E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20841 | PF06203 | CCT | 1.50E-15 | CL0281 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe02g00145 | - | - | pdul:117619919 | 345.125 |