Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00146 ATGACAGCTGCAAATCATCAGCCTCTGCGTGCACCTCCTTTCGGGGATTGCATCCAAGAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATAGTGACGATACGATGGACGACGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCACAGTGGTATTGTAATGGCGTCCAGGACTAGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCTGCTGTAACCCCTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCTGATGCTCAAAATTATAGGGTTTTGGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACAACGTACGAAAAGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTTTCTGAAAGTAATACTCCTGCAATGCGACGTGGACCTGCTGGGCCAAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTTCTGGATAACATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTTTCTGGCCATGGAGATAATCAGAAATCTCCAGAAGAATCTGATAATCTAGTTGACAAAAGTTCCAGCGATCCTTCTCTCAATCAATACAACGAAGATTTGCATGACTGCACCGACGAGTTTATTGATTCTTTTCCGGTGGAAATTGTGCATTCTTCGCTCAACGAAGACGAGCAGGACCCTCCAATTGGAATTCCTAGTGTTTCCGATACAGAGATAGTCGTCCCAGCAAGTTTTAATTAG 1056 45.08 MTAANHQPLRAPPFGDCIQESFPIEDDGECEDSGGDSDDTMDDVEEIGVNSVSVANHSGIVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYNVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGHGDNQKSPEESDNLVDKSSSDPSLNQYNEDLHDCTDEFIDSFPVEIVHSSLNEDEQDPPIGIPSVSDTEIVVPASFN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1002727 1006845 + Bpe007996.1 Bpe02g00146 98295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00146 351 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 247 - -
Bpe02g00146 351 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 MobiDBLite consensus disorder prediction 262 303 - -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 1 42 - -
Bpe02g00146 351 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 350 - -
Bpe02g00146 351 Pfam CCT motif 132 173 IPR010402 GO:0005515
Bpe02g00146 351 Gene3D - 199 249 IPR013088 GO:0006355|GO:0008270
Bpe02g00146 351 MobiDBLite consensus disorder prediction 22 42 - -
Bpe02g00146 351 SMART tify_2 62 97 IPR010399 -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 276 290 - -
Bpe02g00146 351 PANTHER GATA TRANSCRIPTION FACTOR 28 1 350 IPR045280 GO:0006355
Bpe02g00146 351 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 172 197 - -
Bpe02g00146 351 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Bpe02g00146 351 Pfam tify domain 65 96 IPR010399 -
Bpe02g00146 351 ProSiteProfiles GATA-type zinc finger domain profile. 197 245 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00146 - - - zju:107421329 417.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00146 Bpe04g00413 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00146 Bpe-Chr2:1002727 Bpe14g00482 Bpe-Chr14:4304540 2.98E-139 dispersed
Bpe14g00074 Bpe-Chr14:1184623 Bpe02g00146 Bpe-Chr2:1002727 6.54E-06 dispersed
Bpe02g00145 Bpe-Chr2:998149 Bpe02g00146 Bpe-Chr2:1002727 2.34E-64 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe02g00145 . 16 264 Tify Gene Family AT4G24470 53.3 1.7e-62 236.5
Bpe04g00413 BCT 65 257 Tify Gene Family AT4G24470 62.9 6.0e-60 228.0
Bpe14g00482 . 65 241 Tify Gene Family AT4G24470 52.2 4.3e-42 168.7
Bpe07g00312 . 89 279 Tify Gene Family AT1G51600 62.9 2.4e-58 222.6
Bpe14g00482 . 25 241 Tify Gene Family AT1G51600 52.2 1.6e-49 193.4
Bpe02g00146 BCT 24 245 Tify Gene Family AT1G51600 52.2 2.3e-48 189.5
Bpe04g00413 BCT 46 248 Tify Gene Family AT1G51600 52.9 3.9e-48 188.7
Bpe05g00883 BCT 1 184 Tify Gene Family AT4G14720 53.1 3.4e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20842 PF06203 CCT 1.20E-13 CL0281 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00146 Bpe_Chr02 FPKM 0.0 6.23553 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0