Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00146 ATGACAGCTGCAAATCATCAGCCTCTGCGTGCACCTCCTTTCGGGGATTGCATCCAAGAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATAGTGACGATACGATGGACGACGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCACAGTGGTATTGTAATGGCGTCCAGGACTAGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCTGCTGTAACCCCTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCTGATGCTCAAAATTATAGGGTTTTGGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACAACGTACGAAAAGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTTTCTGAAAGTAATACTCCTGCAATGCGACGTGGACCTGCTGGGCCAAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTTCTGGATAACATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTTTCTGGCCATGGAGATAATCAGAAATCTCCAGAAGAATCTGATAATCTAGTTGACAAAAGTTCCAGCGATCCTTCTCTCAATCAATACAACGAAGATTTGCATGACTGCACCGACGAGTTTATTGATTCTTTTCCGGTGGAAATTGTGCATTCTTCGCTCAACGAAGACGAGCAGGACCCTCCAATTGGAATTCCTAGTGTTTCCGATACAGAGATAGTCGTCCCAGCAAGTTTTAATTAG 1056 45.08 MTAANHQPLRAPPFGDCIQESFPIEDDGECEDSGGDSDDTMDDVEEIGVNSVSVANHSGIVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYNVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGHGDNQKSPEESDNLVDKSSSDPSLNQYNEDLHDCTDEFIDSFPVEIVHSSLNEDEQDPPIGIPSVSDTEIVVPASFN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1002727 1006845 + Bpe007996.1 Bpe02g00146 98295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00146 351 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 247 - -
Bpe02g00146 351 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 SMART GATA_3 197 250 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 MobiDBLite consensus disorder prediction 262 303 - -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 1 42 - -
Bpe02g00146 351 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355|GO:0043565
Bpe02g00146 351 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 350 - -
Bpe02g00146 351 Pfam CCT motif 132 173 IPR010402 GO:0005515
Bpe02g00146 351 Gene3D - 199 249 IPR013088 GO:0006355|GO:0008270
Bpe02g00146 351 MobiDBLite consensus disorder prediction 22 42 - -
Bpe02g00146 351 SMART tify_2 62 97 IPR010399 -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 276 290 - -
Bpe02g00146 351 PANTHER GATA TRANSCRIPTION FACTOR 28 1 350 IPR045280 GO:0006355
Bpe02g00146 351 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bpe02g00146 351 MobiDBLite consensus disorder prediction 172 197 - -
Bpe02g00146 351 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Bpe02g00146 351 Pfam tify domain 65 96 IPR010399 -
Bpe02g00146 351 ProSiteProfiles GATA-type zinc finger domain profile. 197 245 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00146 Bpe04g00413 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00146 Bpe-Chr2:1002727 Bpe14g00482 Bpe-Chr14:4304540 2.98E-139 dispersed
Bpe14g00074 Bpe-Chr14:1184623 Bpe02g00146 Bpe-Chr2:1002727 6.54E-06 dispersed
Bpe02g00145 Bpe-Chr2:998149 Bpe02g00146 Bpe-Chr2:1002727 2.34E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20842 PF06203 CCT 1.20E-13 CL0281 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00146 - - zju:107421329 417.927