Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00148 ATGGGGAGGGGGAAGATCGTGATTAGGAGAATCGATAACTCGACGAGCAGGCAAGTTACCTTCTCGAAGCGAAGAAATGGATTGGTGAAAAAGGCGAAGGAACTTGCAATCCTATGCGACGCGGAAGTAGGCGTGGTAATCTTCTCCAGCACAGGCAAGCTCTACGATTTCGCAAGTACCAGCAGCATGAAATCGGTAATTGATCGATACAATAAAACAAAGGATGGATGTCAGCAACTTGGGAATCCAACCTCTGAAGTCAAGTTCTGGCAAAGAGAAGCAGCAATATTGCGACAGCGACTGCAGGACTTACAAGAGAGTTACAGGCAAATGAGAGGTGAAGACCTTTCTGGTTGGAGTGTCAAAGATTTACAGAATCTGGAAAATCAATTGGAAAGGAGTCTTCATAGTGTTCGGACAAAAAAGGAAAAGATCTTAATGGATGAAATTCAAGACCTAAAGCAAAAGGTTCATGGAAAAACTGGAGGGAAGAAATATTCATTTATCATAAATAACGAAGGATCTGTTGACTCTTATGTGGCCGTGAACCTTCAGCTTAGCCAGCCAAAGCAACACGATGATGACGATGAAGCAAGCGGAACAAAGTTGGGACTATAA 618 43.2 MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKAKELAILCDAEVGVVIFSSTGKLYDFASTSSMKSVIDRYNKTKDGCQQLGNPTSEVKFWQREAAILRQRLQDLQESYRQMRGEDLSGWSVKDLQNLENQLERSLHSVRTKKEKILMDEIQDLKQKVHGKTGGKKYSFIINNEGSVDSYVAVNLQLSQPKQHDDDDEASGTKLGL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1012227 1019007 + Bpe007998.2 Bpe02g00148 98297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00148 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bpe02g00148 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 Coils Coil 87 114 - -
Bpe02g00148 205 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bpe02g00148 205 Pfam K-box region 84 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g00148 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 - -
Bpe02g00148 205 Coils Coil 121 144 - -
Bpe02g00148 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Bpe02g00148 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe02g00148 205 ProSiteProfiles K-box domain profile. 87 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe02g00148 205 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 156 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00148 Bpe14g00493 CCT
Bpe02g00148 Bpe02g01163 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00148 Bpe-Chr2:1012227 Bpe14g00138 Bpe-Chr14:1858128 2.56E-46 dispersed
Bpe11g00104 Bpe-Chr11:712758 Bpe02g00148 Bpe-Chr2:1012227 3.79E-41 dispersed
Bpe15g00259 Bpe-Chr15:13954296 Bpe02g00148 Bpe-Chr2:1012227 2.85E-38 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe02g00148 Bpe-Chr2:1012227 2.02E-25 dispersed
Bpe14g00493 Bpe-Chr14:4388416 Bpe02g00148 Bpe-Chr2:1012227 9.87E-73 wgd
Bpe02g00148 Bpe-Chr2:1012227 Bpe02g01163 Bpe-Chr2:15251324 1.08E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20843 PF01486 K-box 7.50E-24 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00148 K09264 - tcc:18591843 265.774